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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638001_a_at:

>probe:Drosophila_2:1638001_a_at:135:193; Interrogation_Position=1206; Antisense; AACTCCGTGAGGCATTTTGACTTGA
>probe:Drosophila_2:1638001_a_at:521:587; Interrogation_Position=1261; Antisense; TGGAGATAATGGTGCCCACTTGCTC
>probe:Drosophila_2:1638001_a_at:112:311; Interrogation_Position=1276; Antisense; CCACTTGCTCGTATCGCATGGGAAA
>probe:Drosophila_2:1638001_a_at:670:251; Interrogation_Position=1304; Antisense; CAAGATCGGATTGGGCTACGCGGTT
>probe:Drosophila_2:1638001_a_at:520:237; Interrogation_Position=1341; Antisense; AATCTGAGCTACACGGTGCTGTGGC
>probe:Drosophila_2:1638001_a_at:663:259; Interrogation_Position=1365; Antisense; CAGCCAAATCGATTTATCCTGCTCT
>probe:Drosophila_2:1638001_a_at:412:47; Interrogation_Position=1380; Antisense; ATCCTGCTCTTCACCTATGTTTTTT
>probe:Drosophila_2:1638001_a_at:352:637; Interrogation_Position=1417; Antisense; TCGTCTGTGGTTTCGTCGTCTTTAA
>probe:Drosophila_2:1638001_a_at:398:99; Interrogation_Position=1441; Antisense; AGATGATGACACGTTGTCCCTTCCG
>probe:Drosophila_2:1638001_a_at:605:169; Interrogation_Position=1474; Antisense; AAAGGCAGACGCTCTATAACCGCGT
>probe:Drosophila_2:1638001_a_at:386:327; Interrogation_Position=1495; Antisense; GCGTCTCGACTATACCGCAATTTTA
>probe:Drosophila_2:1638001_a_at:394:243; Interrogation_Position=1513; Antisense; AATTTTAGACTGCACTTTCCACTCG
>probe:Drosophila_2:1638001_a_at:703:557; Interrogation_Position=1542; Antisense; GGACAATAAGCCCAAGATTCTCAAG
>probe:Drosophila_2:1638001_a_at:116:167; Interrogation_Position=1699; Antisense; AAATGTAACCAATGTCCTCCATCCA

Paste this into a BLAST search page for me
AACTCCGTGAGGCATTTTGACTTGATGGAGATAATGGTGCCCACTTGCTCCCACTTGCTCGTATCGCATGGGAAACAAGATCGGATTGGGCTACGCGGTTAATCTGAGCTACACGGTGCTGTGGCCAGCCAAATCGATTTATCCTGCTCTATCCTGCTCTTCACCTATGTTTTTTTCGTCTGTGGTTTCGTCGTCTTTAAAGATGATGACACGTTGTCCCTTCCGAAAGGCAGACGCTCTATAACCGCGTGCGTCTCGACTATACCGCAATTTTAAATTTTAGACTGCACTTTCCACTCGGGACAATAAGCCCAAGATTCTCAAGAAATGTAACCAATGTCCTCCATCCA

Full Affymetrix probeset data:

Annotations for 1638001_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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