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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638011_a_at:

>probe:Drosophila_2:1638011_a_at:654:401; Interrogation_Position=1350; Antisense; GACATCGTGGACAACATGCTGGCCA
>probe:Drosophila_2:1638011_a_at:295:721; Interrogation_Position=1381; Antisense; TTGCCCGCCTGATGGAGATGATTCC
>probe:Drosophila_2:1638011_a_at:382:99; Interrogation_Position=1414; Antisense; AGATGACCATGGTCGCGGACCCAAT
>probe:Drosophila_2:1638011_a_at:95:251; Interrogation_Position=1435; Antisense; CAATCGTCAAGGGTGGTGCCTTCGA
>probe:Drosophila_2:1638011_a_at:198:435; Interrogation_Position=1458; Antisense; GAGGGAGTCATCGACGACCATGTCT
>probe:Drosophila_2:1638011_a_at:715:597; Interrogation_Position=1478; Antisense; TGTCTCACCATTCGGCTACATGAAG
>probe:Drosophila_2:1638011_a_at:662:67; Interrogation_Position=1570; Antisense; ATGGCATCTTCAATGGGCTGGGACC
>probe:Drosophila_2:1638011_a_at:170:97; Interrogation_Position=1606; Antisense; AGATATCCGGTGCAACTGCCAAGCA
>probe:Drosophila_2:1638011_a_at:579:91; Interrogation_Position=1672; Antisense; AGATCTGGAAACTGTCGGACGTCGA
>probe:Drosophila_2:1638011_a_at:213:441; Interrogation_Position=1701; Antisense; GATGGGTTCCTGGACTCTGACGAGT
>probe:Drosophila_2:1638011_a_at:685:287; Interrogation_Position=1731; Antisense; CTGGCCTTGCACTTAATCAACGTCA
>probe:Drosophila_2:1638011_a_at:480:551; Interrogation_Position=1790; Antisense; GGAGCACTTAGTACCGCCGTCGAAG
>probe:Drosophila_2:1638011_a_at:341:379; Interrogation_Position=1811; Antisense; GAAGCGCTATGACTAGTGTCCTGTA
>probe:Drosophila_2:1638011_a_at:527:515; Interrogation_Position=1826; Antisense; GTGTCCTGTAGCATACGCATACGCA

Paste this into a BLAST search page for me
GACATCGTGGACAACATGCTGGCCATTGCCCGCCTGATGGAGATGATTCCAGATGACCATGGTCGCGGACCCAATCAATCGTCAAGGGTGGTGCCTTCGAGAGGGAGTCATCGACGACCATGTCTTGTCTCACCATTCGGCTACATGAAGATGGCATCTTCAATGGGCTGGGACCAGATATCCGGTGCAACTGCCAAGCAAGATCTGGAAACTGTCGGACGTCGAGATGGGTTCCTGGACTCTGACGAGTCTGGCCTTGCACTTAATCAACGTCAGGAGCACTTAGTACCGCCGTCGAAGGAAGCGCTATGACTAGTGTCCTGTAGTGTCCTGTAGCATACGCATACGCA

Full Affymetrix probeset data:

Annotations for 1638011_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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