FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638043_a_at:

>probe:Drosophila_2:1638043_a_at:684:289; Interrogation_Position=2340; Antisense; CGGAGCTAGGGTGTGCAATCGATAT
>probe:Drosophila_2:1638043_a_at:91:273; Interrogation_Position=2403; Antisense; CATTTGTAGACTTAGCTGCTTGTAG
>probe:Drosophila_2:1638043_a_at:254:377; Interrogation_Position=2427; Antisense; GAAGCTCATTCAAGTTGTTGCAAAT
>probe:Drosophila_2:1638043_a_at:702:239; Interrogation_Position=2474; Antisense; AATCAATCCACCAGCGATTGGCTTC
>probe:Drosophila_2:1638043_a_at:180:465; Interrogation_Position=2489; Antisense; GATTGGCTTCCAGGCATCGTCCTAG
>probe:Drosophila_2:1638043_a_at:401:41; Interrogation_Position=2504; Antisense; ATCGTCCTAGTCTATAAGCCGGGCA
>probe:Drosophila_2:1638043_a_at:591:657; Interrogation_Position=2518; Antisense; TAAGCCGGGCACAAAACTGTATTTT
>probe:Drosophila_2:1638043_a_at:608:339; Interrogation_Position=2559; Antisense; GCTACATATTTGCTAATCCCAGCCC
>probe:Drosophila_2:1638043_a_at:707:161; Interrogation_Position=2600; Antisense; ACAATTGCATGTCAGAGCGCAGACT
>probe:Drosophila_2:1638043_a_at:356:123; Interrogation_Position=2615; Antisense; AGCGCAGACTTGCTCTTGATCAAAA
>probe:Drosophila_2:1638043_a_at:283:443; Interrogation_Position=2675; Antisense; GATGTACAGACACTTGGGCCTAGCC
>probe:Drosophila_2:1638043_a_at:512:121; Interrogation_Position=2712; Antisense; AGCGGTCCCTGGCATCAAGCATATT
>probe:Drosophila_2:1638043_a_at:202:209; Interrogation_Position=2728; Antisense; AAGCATATTCCACTAGCATACCCGT
>probe:Drosophila_2:1638043_a_at:147:385; Interrogation_Position=2760; Antisense; GAACTACGCATCAATCTTGTTTGTC

Paste this into a BLAST search page for me
CGGAGCTAGGGTGTGCAATCGATATCATTTGTAGACTTAGCTGCTTGTAGGAAGCTCATTCAAGTTGTTGCAAATAATCAATCCACCAGCGATTGGCTTCGATTGGCTTCCAGGCATCGTCCTAGATCGTCCTAGTCTATAAGCCGGGCATAAGCCGGGCACAAAACTGTATTTTGCTACATATTTGCTAATCCCAGCCCACAATTGCATGTCAGAGCGCAGACTAGCGCAGACTTGCTCTTGATCAAAAGATGTACAGACACTTGGGCCTAGCCAGCGGTCCCTGGCATCAAGCATATTAAGCATATTCCACTAGCATACCCGTGAACTACGCATCAATCTTGTTTGTC

Full Affymetrix probeset data:

Annotations for 1638043_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720