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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638244_s_at:

>probe:Drosophila_2:1638244_s_at:25:597; Interrogation_Position=3648; Antisense; TGTGTCATCCGTCACCATTATGTCA
>probe:Drosophila_2:1638244_s_at:581:367; Interrogation_Position=3691; Antisense; GAATCGCCCAGGATCGTTGATGTTA
>probe:Drosophila_2:1638244_s_at:628:655; Interrogation_Position=3714; Antisense; TAAGGAGCAGCGCTTGTCCGGATTC
>probe:Drosophila_2:1638244_s_at:236:727; Interrogation_Position=3727; Antisense; TTGTCCGGATTCTTTGTGTGTCTGA
>probe:Drosophila_2:1638244_s_at:189:5; Interrogation_Position=3754; Antisense; ATTGGACTATCGGTGCTGATGGCTC
>probe:Drosophila_2:1638244_s_at:662:439; Interrogation_Position=3771; Antisense; GATGGCTCCGCTTCTTCGGTTGATA
>probe:Drosophila_2:1638244_s_at:490:619; Interrogation_Position=3806; Antisense; TGCTCTTTGGAGTCTTCTTGTACAT
>probe:Drosophila_2:1638244_s_at:116:407; Interrogation_Position=3875; Antisense; GACTGTATTTCATGCCGGTCAAACA
>probe:Drosophila_2:1638244_s_at:336:705; Interrogation_Position=3900; Antisense; TTATCCACCCACATCATACGTGAAG
>probe:Drosophila_2:1638244_s_at:209:139; Interrogation_Position=3917; Antisense; ACGTGAAGCGATTGCGTCCTTGGAA
>probe:Drosophila_2:1638244_s_at:495:563; Interrogation_Position=3938; Antisense; GGAAGCTGCATTTGTTTACCACCAT
>probe:Drosophila_2:1638244_s_at:61:433; Interrogation_Position=3990; Antisense; GAGTGTGAAGTCGTCCCAATTCTCG
>probe:Drosophila_2:1638244_s_at:665:713; Interrogation_Position=4030; Antisense; TTCCTGATCATGATGGTGCCGATAC
>probe:Drosophila_2:1638244_s_at:631:295; Interrogation_Position=4131; Antisense; CGACGAGCCCGATTTCTATGAACAA

Paste this into a BLAST search page for me
TGTGTCATCCGTCACCATTATGTCAGAATCGCCCAGGATCGTTGATGTTATAAGGAGCAGCGCTTGTCCGGATTCTTGTCCGGATTCTTTGTGTGTCTGAATTGGACTATCGGTGCTGATGGCTCGATGGCTCCGCTTCTTCGGTTGATATGCTCTTTGGAGTCTTCTTGTACATGACTGTATTTCATGCCGGTCAAACATTATCCACCCACATCATACGTGAAGACGTGAAGCGATTGCGTCCTTGGAAGGAAGCTGCATTTGTTTACCACCATGAGTGTGAAGTCGTCCCAATTCTCGTTCCTGATCATGATGGTGCCGATACCGACGAGCCCGATTTCTATGAACAA

Full Affymetrix probeset data:

Annotations for 1638244_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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