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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638249_at:

>probe:Drosophila_2:1638249_at:398:79; Interrogation_Position=126; Antisense; AGGTTTTGGCGAGATTGTGTGTCAC
>probe:Drosophila_2:1638249_at:57:583; Interrogation_Position=132; Antisense; TGGCGAGATTGTGTGTCACGCCCGT
>probe:Drosophila_2:1638249_at:598:427; Interrogation_Position=136; Antisense; GAGATTGTGTGTCACGCCCGTGCCA
>probe:Drosophila_2:1638249_at:407:465; Interrogation_Position=138; Antisense; GATTGTGTGTCACGCCCGTGCCAGC
>probe:Drosophila_2:1638249_at:158:135; Interrogation_Position=149; Antisense; ACGCCCGTGCCAGCTGGGGTATATA
>probe:Drosophila_2:1638249_at:590:529; Interrogation_Position=165; Antisense; GGGTATATAAGAATTGGGCCGGATC
>probe:Drosophila_2:1638249_at:186:687; Interrogation_Position=168; Antisense; TATATAAGAATTGGGCCGGATCGGG
>probe:Drosophila_2:1638249_at:220:245; Interrogation_Position=176; Antisense; AATTGGGCCGGATCGGGTGGCATTC
>probe:Drosophila_2:1638249_at:389:555; Interrogation_Position=181; Antisense; GGCCGGATCGGGTGGCATTCAGTTT
>probe:Drosophila_2:1638249_at:192:523; Interrogation_Position=30; Antisense; GGGCCGGGCTATCCAGCCCTCCAAT
>probe:Drosophila_2:1638249_at:113:629; Interrogation_Position=49; Antisense; TCCAATTCTCCGCTTATCAGTGGGC
>probe:Drosophila_2:1638249_at:728:247; Interrogation_Position=51; Antisense; CAATTCTCCGCTTATCAGTGGGCGA
>probe:Drosophila_2:1638249_at:223:9; Interrogation_Position=53; Antisense; ATTCTCCGCTTATCAGTGGGCGAAG
>probe:Drosophila_2:1638249_at:42:643; Interrogation_Position=55; Antisense; TCTCCGCTTATCAGTGGGCGAAGGA

Paste this into a BLAST search page for me
AGGTTTTGGCGAGATTGTGTGTCACTGGCGAGATTGTGTGTCACGCCCGTGAGATTGTGTGTCACGCCCGTGCCAGATTGTGTGTCACGCCCGTGCCAGCACGCCCGTGCCAGCTGGGGTATATAGGGTATATAAGAATTGGGCCGGATCTATATAAGAATTGGGCCGGATCGGGAATTGGGCCGGATCGGGTGGCATTCGGCCGGATCGGGTGGCATTCAGTTTGGGCCGGGCTATCCAGCCCTCCAATTCCAATTCTCCGCTTATCAGTGGGCCAATTCTCCGCTTATCAGTGGGCGAATTCTCCGCTTATCAGTGGGCGAAGTCTCCGCTTATCAGTGGGCGAAGGA

Full Affymetrix probeset data:

Annotations for 1638249_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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