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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638260_s_at:

>probe:Drosophila_2:1638260_s_at:521:351; Interrogation_Position=2951; Antisense; GCAGAGCTCACATTGGCAGCTAGTC
>probe:Drosophila_2:1638260_s_at:212:3; Interrogation_Position=2962; Antisense; ATTGGCAGCTAGTCCTCCAAAGTCA
>probe:Drosophila_2:1638260_s_at:316:169; Interrogation_Position=2980; Antisense; AAAGTCACCGTCAGAATTCTTCTAT
>probe:Drosophila_2:1638260_s_at:682:245; Interrogation_Position=2994; Antisense; AATTCTTCTATTCGGTTTGACTTGG
>probe:Drosophila_2:1638260_s_at:668:289; Interrogation_Position=3006; Antisense; CGGTTTGACTTGGATGTGTGCACAT
>probe:Drosophila_2:1638260_s_at:337:517; Interrogation_Position=3021; Antisense; GTGTGCACATACATACGTGCGTGTG
>probe:Drosophila_2:1638260_s_at:23:141; Interrogation_Position=3035; Antisense; ACGTGCGTGTGCCATACCATAATAC
>probe:Drosophila_2:1638260_s_at:53:679; Interrogation_Position=3079; Antisense; TATAACGATTTTAGCCTACACCGGG
>probe:Drosophila_2:1638260_s_at:35:179; Interrogation_Position=3108; Antisense; AAACTATGTATCTTTGCGAACGCCA
>probe:Drosophila_2:1638260_s_at:673:25; Interrogation_Position=3151; Antisense; ATAGTATCTGAGACTTCTCTCTCCG
>probe:Drosophila_2:1638260_s_at:303:643; Interrogation_Position=3170; Antisense; TCTCCGCATTACTTGTCTACAGATG
>probe:Drosophila_2:1638260_s_at:313:657; Interrogation_Position=3206; Antisense; TAATGTGTTTCAACGTGCTTACAAT
>probe:Drosophila_2:1638260_s_at:361:515; Interrogation_Position=3315; Antisense; GTGTAAATCTTTTAGGGCCAGCATA
>probe:Drosophila_2:1638260_s_at:378:523; Interrogation_Position=3329; Antisense; GGGCCAGCATATATACCAATCTGAA

Paste this into a BLAST search page for me
GCAGAGCTCACATTGGCAGCTAGTCATTGGCAGCTAGTCCTCCAAAGTCAAAAGTCACCGTCAGAATTCTTCTATAATTCTTCTATTCGGTTTGACTTGGCGGTTTGACTTGGATGTGTGCACATGTGTGCACATACATACGTGCGTGTGACGTGCGTGTGCCATACCATAATACTATAACGATTTTAGCCTACACCGGGAAACTATGTATCTTTGCGAACGCCAATAGTATCTGAGACTTCTCTCTCCGTCTCCGCATTACTTGTCTACAGATGTAATGTGTTTCAACGTGCTTACAATGTGTAAATCTTTTAGGGCCAGCATAGGGCCAGCATATATACCAATCTGAA

Full Affymetrix probeset data:

Annotations for 1638260_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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