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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638274_s_at:

>probe:Drosophila_2:1638274_s_at:196:523; Interrogation_Position=1630; Antisense; GTGGCCGCCAAGGTTATCAAACGTT
>probe:Drosophila_2:1638274_s_at:433:177; Interrogation_Position=1648; Antisense; AAACGTTACATTCTGCACGCCAAGA
>probe:Drosophila_2:1638274_s_at:293:553; Interrogation_Position=1689; Antisense; GGAGCACGATTTCATCATGGCCACC
>probe:Drosophila_2:1638274_s_at:483:319; Interrogation_Position=1720; Antisense; GCCGACCGTGTCATCGTGATCGAGG
>probe:Drosophila_2:1638274_s_at:632:605; Interrogation_Position=1736; Antisense; TGATCGAGGGTCAGCCTTCAGTGAA
>probe:Drosophila_2:1638274_s_at:520:83; Interrogation_Position=1755; Antisense; AGTGAAGACGACAGCCTTTTCGCCG
>probe:Drosophila_2:1638274_s_at:681:663; Interrogation_Position=1790; Antisense; TAAATGGCATGAACCGCTTCCTCGA
>probe:Drosophila_2:1638274_s_at:171:193; Interrogation_Position=1814; Antisense; AACTGCTTGGTATTACGTTCCGTCG
>probe:Drosophila_2:1638274_s_at:551:155; Interrogation_Position=1891; Antisense; ACAGAACAGAAACGCTCCGGCCAGT
>probe:Drosophila_2:1638274_s_at:28:313; Interrogation_Position=1910; Antisense; GCCAGTTCTTCTTCTTGGAGGACGA
>probe:Drosophila_2:1638274_s_at:185:191; Interrogation_Position=1942; Antisense; AACTAAGACAGGATCACGGGCAACT
>probe:Drosophila_2:1638274_s_at:356:139; Interrogation_Position=1957; Antisense; ACGGGCAACTTCGATGGGACAGCTC
>probe:Drosophila_2:1638274_s_at:6:529; Interrogation_Position=1972; Antisense; GGGACAGCTCGTTTCTCTATGTTCT
>probe:Drosophila_2:1638274_s_at:718:115; Interrogation_Position=2001; Antisense; AGCTTTCCTTCGTTCATTTTGCATT

Paste this into a BLAST search page for me
GTGGCCGCCAAGGTTATCAAACGTTAAACGTTACATTCTGCACGCCAAGAGGAGCACGATTTCATCATGGCCACCGCCGACCGTGTCATCGTGATCGAGGTGATCGAGGGTCAGCCTTCAGTGAAAGTGAAGACGACAGCCTTTTCGCCGTAAATGGCATGAACCGCTTCCTCGAAACTGCTTGGTATTACGTTCCGTCGACAGAACAGAAACGCTCCGGCCAGTGCCAGTTCTTCTTCTTGGAGGACGAAACTAAGACAGGATCACGGGCAACTACGGGCAACTTCGATGGGACAGCTCGGGACAGCTCGTTTCTCTATGTTCTAGCTTTCCTTCGTTCATTTTGCATT

Full Affymetrix probeset data:

Annotations for 1638274_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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