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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638324_s_at:

>probe:Drosophila_2:1638324_s_at:349:287; Interrogation_Position=1021; Antisense; CGGCAATTTCTATCGCAAGACCTAC
>probe:Drosophila_2:1638324_s_at:594:631; Interrogation_Position=1058; Antisense; TCCGTGGATGGAGGCAGTCGCACCA
>probe:Drosophila_2:1638324_s_at:293:129; Interrogation_Position=1079; Antisense; ACCACCGGCAGTAGTTTGGCTCAAT
>probe:Drosophila_2:1638324_s_at:365:537; Interrogation_Position=1124; Antisense; GGTATGGGTTGCATGCCGCAGACCA
>probe:Drosophila_2:1638324_s_at:397:55; Interrogation_Position=1148; Antisense; ATGAACGCCGGTAAGCATCTGCTCC
>probe:Drosophila_2:1638324_s_at:444:39; Interrogation_Position=1164; Antisense; ATCTGCTCCAGAATGGCCAGGTCGG
>probe:Drosophila_2:1638324_s_at:336:393; Interrogation_Position=1188; Antisense; GAAAGGCGTACATCGATCTGAACAA
>probe:Drosophila_2:1638324_s_at:615:671; Interrogation_Position=1329; Antisense; TACCTTTACCATTACCAACTATCAG
>probe:Drosophila_2:1638324_s_at:427:35; Interrogation_Position=1349; Antisense; ATCAGTAGTCTGTAGTCTGCGGAGA
>probe:Drosophila_2:1638324_s_at:49:687; Interrogation_Position=1382; Antisense; TATAATGTTTATATGCCGGGCAGGC
>probe:Drosophila_2:1638324_s_at:399:341; Interrogation_Position=1433; Antisense; GCTAGGACCCTAAGTGCGTGAATGT
>probe:Drosophila_2:1638324_s_at:32:231; Interrogation_Position=1453; Antisense; AATGTGGCCATGTTTGTGTGACTGA
>probe:Drosophila_2:1638324_s_at:466:473; Interrogation_Position=1484; Antisense; GTTAATGTTTTTCTAGCTGAGCGTG
>probe:Drosophila_2:1638324_s_at:565:353; Interrogation_Position=1545; Antisense; GCAGCCGTAAATCGTTTCGCAAAAC

Paste this into a BLAST search page for me
CGGCAATTTCTATCGCAAGACCTACTCCGTGGATGGAGGCAGTCGCACCAACCACCGGCAGTAGTTTGGCTCAATGGTATGGGTTGCATGCCGCAGACCAATGAACGCCGGTAAGCATCTGCTCCATCTGCTCCAGAATGGCCAGGTCGGGAAAGGCGTACATCGATCTGAACAATACCTTTACCATTACCAACTATCAGATCAGTAGTCTGTAGTCTGCGGAGATATAATGTTTATATGCCGGGCAGGCGCTAGGACCCTAAGTGCGTGAATGTAATGTGGCCATGTTTGTGTGACTGAGTTAATGTTTTTCTAGCTGAGCGTGGCAGCCGTAAATCGTTTCGCAAAAC

Full Affymetrix probeset data:

Annotations for 1638324_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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