FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638398_at:

>probe:Drosophila_2:1638398_at:564:87; Interrogation_Position=2022; Antisense; AGTCGGGCATCGAGCTGGATGACAA
>probe:Drosophila_2:1638398_at:669:191; Interrogation_Position=2045; Antisense; AACTATCGGGACGAGGACATCTTCG
>probe:Drosophila_2:1638398_at:650:35; Interrogation_Position=2082; Antisense; ATCATTTGCTGCGATGTCTGGAGAA
>probe:Drosophila_2:1638398_at:132:487; Interrogation_Position=2116; Antisense; GTAGCAACATTTGAACATCTCAGTT
>probe:Drosophila_2:1638398_at:239:493; Interrogation_Position=2154; Antisense; GTAAGGTTTGCCACGAGCTCATTAG
>probe:Drosophila_2:1638398_at:278:397; Interrogation_Position=2188; Antisense; GACAACGGCATCAACGAGAGCGACA
>probe:Drosophila_2:1638398_at:365:425; Interrogation_Position=2203; Antisense; GAGAGCGACACCCACAGCCAAAAAA
>probe:Drosophila_2:1638398_at:547:179; Interrogation_Position=2226; Antisense; AAACATCAACGGTGGCGACAGCAAT
>probe:Drosophila_2:1638398_at:634:105; Interrogation_Position=2293; Antisense; AGAACTGACGCGTCTTCTCATAAAT
>probe:Drosophila_2:1638398_at:334:13; Interrogation_Position=2380; Antisense; ATTCAGCATCTTTTGTATGTGCATT
>probe:Drosophila_2:1638398_at:524:507; Interrogation_Position=2480; Antisense; GTGCGATCTGTTGTATTTCGTTCTA
>probe:Drosophila_2:1638398_at:113:473; Interrogation_Position=2520; Antisense; GTTCACCATTTGTGTCATGTTTTTC
>probe:Drosophila_2:1638398_at:300:59; Interrogation_Position=2536; Antisense; ATGTTTTTCACACGATCTGAGCCCG
>probe:Drosophila_2:1638398_at:199:41; Interrogation_Position=2550; Antisense; ATCTGAGCCCGAAACTGGCTTCGAA

Paste this into a BLAST search page for me
AGTCGGGCATCGAGCTGGATGACAAAACTATCGGGACGAGGACATCTTCGATCATTTGCTGCGATGTCTGGAGAAGTAGCAACATTTGAACATCTCAGTTGTAAGGTTTGCCACGAGCTCATTAGGACAACGGCATCAACGAGAGCGACAGAGAGCGACACCCACAGCCAAAAAAAAACATCAACGGTGGCGACAGCAATAGAACTGACGCGTCTTCTCATAAATATTCAGCATCTTTTGTATGTGCATTGTGCGATCTGTTGTATTTCGTTCTAGTTCACCATTTGTGTCATGTTTTTCATGTTTTTCACACGATCTGAGCCCGATCTGAGCCCGAAACTGGCTTCGAA

Full Affymetrix probeset data:

Annotations for 1638398_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720