FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638446_a_at:

>probe:Drosophila_2:1638446_a_at:282:269; Interrogation_Position=2324; Antisense; CAGGCATTCAATCGCCGGGAACTCA
>probe:Drosophila_2:1638446_a_at:117:527; Interrogation_Position=2340; Antisense; GGGAACTCAAGCTCTACTTCAGAAC
>probe:Drosophila_2:1638446_a_at:28:399; Interrogation_Position=2429; Antisense; GACACAACAGGCACAATCGATCCGG
>probe:Drosophila_2:1638446_a_at:120:293; Interrogation_Position=2478; Antisense; CGTCGAGTCGTCTGGATCGCGAAAC
>probe:Drosophila_2:1638446_a_at:133:333; Interrogation_Position=2529; Antisense; GCTGGAATCGAAGCGAGCGGCTCTT
>probe:Drosophila_2:1638446_a_at:626:409; Interrogation_Position=2578; Antisense; GACGAGTGACCAGCTGACAGGCGTT
>probe:Drosophila_2:1638446_a_at:676:153; Interrogation_Position=2594; Antisense; ACAGGCGTTGAGTCAAAGCCGACAT
>probe:Drosophila_2:1638446_a_at:530:203; Interrogation_Position=2609; Antisense; AAGCCGACATCGACATCGTGTGGCA
>probe:Drosophila_2:1638446_a_at:600:567; Interrogation_Position=2630; Antisense; GGCACTCTCTAGCTCTAGCTTAAGG
>probe:Drosophila_2:1638446_a_at:160:551; Interrogation_Position=2662; Antisense; GGAGAGGTAGCTAGCCCTGGACTCA
>probe:Drosophila_2:1638446_a_at:215:125; Interrogation_Position=2674; Antisense; AGCCCTGGACTCAGTTGCTGGACAA
>probe:Drosophila_2:1638446_a_at:304:559; Interrogation_Position=2693; Antisense; GGACAAGTTCTCTTTTCAGTCCTTG
>probe:Drosophila_2:1638446_a_at:36:357; Interrogation_Position=2727; Antisense; GCACTCTGCTTCGTTTGGTTTAGAT
>probe:Drosophila_2:1638446_a_at:613:727; Interrogation_Position=2741; Antisense; TTGGTTTAGATACTGTCCTGGTCCC

Paste this into a BLAST search page for me
CAGGCATTCAATCGCCGGGAACTCAGGGAACTCAAGCTCTACTTCAGAACGACACAACAGGCACAATCGATCCGGCGTCGAGTCGTCTGGATCGCGAAACGCTGGAATCGAAGCGAGCGGCTCTTGACGAGTGACCAGCTGACAGGCGTTACAGGCGTTGAGTCAAAGCCGACATAAGCCGACATCGACATCGTGTGGCAGGCACTCTCTAGCTCTAGCTTAAGGGGAGAGGTAGCTAGCCCTGGACTCAAGCCCTGGACTCAGTTGCTGGACAAGGACAAGTTCTCTTTTCAGTCCTTGGCACTCTGCTTCGTTTGGTTTAGATTTGGTTTAGATACTGTCCTGGTCCC

Full Affymetrix probeset data:

Annotations for 1638446_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720