Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638593_a_at:

>probe:Drosophila_2:1638593_a_at:60:69; Interrogation_Position=1948; Antisense; ATGGCTCGCGAGGACTGGAAGATCC
>probe:Drosophila_2:1638593_a_at:172:119; Interrogation_Position=2027; Antisense; AGCTGCGCAACCGTCTGGAGGATGT
>probe:Drosophila_2:1638593_a_at:603:37; Interrogation_Position=2060; Antisense; ATCTAACGCGCCTGGGCCAATTGGA
>probe:Drosophila_2:1638593_a_at:390:553; Interrogation_Position=2101; Antisense; GGAGCAGCGGGCACTATTAGCAAAT
>probe:Drosophila_2:1638593_a_at:312:707; Interrogation_Position=2117; Antisense; TTAGCAAATCCATCGGCGGTGGCGC
>probe:Drosophila_2:1638593_a_at:566:329; Interrogation_Position=2132; Antisense; GCGGTGGCGCCATCGATATTAAGCT
>probe:Drosophila_2:1638593_a_at:595:75; Interrogation_Position=2159; Antisense; AGGAGCTGCGCGACTACTTCATGAC
>probe:Drosophila_2:1638593_a_at:363:269; Interrogation_Position=2211; Antisense; CATGGCCAAGTGCATATCGGCGGTC
>probe:Drosophila_2:1638593_a_at:85:23; Interrogation_Position=2224; Antisense; ATATCGGCGGTCAACAAGCAGCAGC
>probe:Drosophila_2:1638593_a_at:138:101; Interrogation_Position=2267; Antisense; AGAGTGTGGCTATCTAGGCGCCCAC
>probe:Drosophila_2:1638593_a_at:464:259; Interrogation_Position=2289; Antisense; CACTCTCGCGTCTGATCTAAACTAA
>probe:Drosophila_2:1638593_a_at:243:145; Interrogation_Position=2365; Antisense; ACTCGCCCACTAATTAACGGACACA
>probe:Drosophila_2:1638593_a_at:335:173; Interrogation_Position=2389; Antisense; AAAGACACCAGGACGAGCCGCGGGA
>probe:Drosophila_2:1638593_a_at:302:313; Interrogation_Position=2464; Antisense; GCCAGCGCTGCGTCAGTTGTAAATG

Paste this into a BLAST search page for me
ATGGCTCGCGAGGACTGGAAGATCCAGCTGCGCAACCGTCTGGAGGATGTATCTAACGCGCCTGGGCCAATTGGAGGAGCAGCGGGCACTATTAGCAAATTTAGCAAATCCATCGGCGGTGGCGCGCGGTGGCGCCATCGATATTAAGCTAGGAGCTGCGCGACTACTTCATGACCATGGCCAAGTGCATATCGGCGGTCATATCGGCGGTCAACAAGCAGCAGCAGAGTGTGGCTATCTAGGCGCCCACCACTCTCGCGTCTGATCTAAACTAAACTCGCCCACTAATTAACGGACACAAAAGACACCAGGACGAGCCGCGGGAGCCAGCGCTGCGTCAGTTGTAAATG

Full Affymetrix probeset data:

Annotations for 1638593_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime