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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638653_a_at:

>probe:Drosophila_2:1638653_a_at:336:277; Interrogation_Position=6581; Antisense; CTAAGCTTATGGTTATTTTTCGATT
>probe:Drosophila_2:1638653_a_at:34:469; Interrogation_Position=6635; Antisense; GTTGTTGCTTATGCTTTTCCATATT
>probe:Drosophila_2:1638653_a_at:66:699; Interrogation_Position=6661; Antisense; TTTTTTGGGTATGCGTTAGTGGAGT
>probe:Drosophila_2:1638653_a_at:65:543; Interrogation_Position=6689; Antisense; GGATTCGTTTTAGGCACCTGTTTTG
>probe:Drosophila_2:1638653_a_at:177:73; Interrogation_Position=6700; Antisense; AGGCACCTGTTTTGGGATTTCTATT
>probe:Drosophila_2:1638653_a_at:453:529; Interrogation_Position=6713; Antisense; GGGATTTCTATTGTCACTAACACAC
>probe:Drosophila_2:1638653_a_at:174:157; Interrogation_Position=6736; Antisense; ACACCCACTTATACACACCTAGTTG
>probe:Drosophila_2:1638653_a_at:240:665; Interrogation_Position=6747; Antisense; TACACACCTAGTTGGAACATGTTCC
>probe:Drosophila_2:1638653_a_at:503:269; Interrogation_Position=6764; Antisense; CATGTTCCTGCACTTTTACGTTTTT
>probe:Drosophila_2:1638653_a_at:233:615; Interrogation_Position=6863; Antisense; TGCAAATGGGATAAGCCGGAATTCT
>probe:Drosophila_2:1638653_a_at:323:19; Interrogation_Position=6890; Antisense; ATGTAATTACTTGCTAGAACGGTGC
>probe:Drosophila_2:1638653_a_at:360:387; Interrogation_Position=7028; Antisense; GAAAACCAACCCAATCCGAGCAAGA
>probe:Drosophila_2:1638653_a_at:163:421; Interrogation_Position=7045; Antisense; GAGCAAGATCCAAAAGCGTTTCAAG
>probe:Drosophila_2:1638653_a_at:373:497; Interrogation_Position=7115; Antisense; GTCTTGCTACAAATAATTCGTTTAA

Paste this into a BLAST search page for me
CTAAGCTTATGGTTATTTTTCGATTGTTGTTGCTTATGCTTTTCCATATTTTTTTTGGGTATGCGTTAGTGGAGTGGATTCGTTTTAGGCACCTGTTTTGAGGCACCTGTTTTGGGATTTCTATTGGGATTTCTATTGTCACTAACACACACACCCACTTATACACACCTAGTTGTACACACCTAGTTGGAACATGTTCCCATGTTCCTGCACTTTTACGTTTTTTGCAAATGGGATAAGCCGGAATTCTATGTAATTACTTGCTAGAACGGTGCGAAAACCAACCCAATCCGAGCAAGAGAGCAAGATCCAAAAGCGTTTCAAGGTCTTGCTACAAATAATTCGTTTAA

Full Affymetrix probeset data:

Annotations for 1638653_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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