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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638667_a_at:

>probe:Drosophila_2:1638667_a_at:357:291; Interrogation_Position=1019; Antisense; CGGGAAGTGCTGCTGCTCAGTTAAT
>probe:Drosophila_2:1638667_a_at:206:647; Interrogation_Position=1035; Antisense; TCAGTTAATGTTGAGCCCCTCTCAG
>probe:Drosophila_2:1638667_a_at:474:489; Interrogation_Position=1187; Antisense; GTACATAAGACATGCCTACTACGCC
>probe:Drosophila_2:1638667_a_at:201:297; Interrogation_Position=1201; Antisense; CCTACTACGCCCTCGCTAAATGAGT
>probe:Drosophila_2:1638667_a_at:445:431; Interrogation_Position=1222; Antisense; GAGTCTCGAAAGTAGGAGCTGCCCC
>probe:Drosophila_2:1638667_a_at:313:293; Interrogation_Position=1258; Antisense; CGATCCTCAGTTTCTTCGTTTTGAA
>probe:Drosophila_2:1638667_a_at:24:641; Interrogation_Position=1270; Antisense; TCTTCGTTTTGAACCATTGCAGCGG
>probe:Drosophila_2:1638667_a_at:351:161; Interrogation_Position=1312; Antisense; AAATAAGGGAGCCATCCTGACCCCA
>probe:Drosophila_2:1638667_a_at:47:611; Interrogation_Position=1329; Antisense; TGACCCCAAAATCGATCCCTTGTAA
>probe:Drosophila_2:1638667_a_at:299:43; Interrogation_Position=1339; Antisense; ATCGATCCCTTGTAAGTGTATGCAA
>probe:Drosophila_2:1638667_a_at:201:387; Interrogation_Position=885; Antisense; GAACAAACCTGCTACGAAATCTTTA
>probe:Drosophila_2:1638667_a_at:320:165; Interrogation_Position=901; Antisense; AAATCTTTATGGGAAGCCGTGTGAA
>probe:Drosophila_2:1638667_a_at:639:229; Interrogation_Position=924; Antisense; AATGTGTGTGCTTGCCCGGATTGGA
>probe:Drosophila_2:1638667_a_at:638:81; Interrogation_Position=990; Antisense; AGGGATCTGTTATGCGACGCGATAC

Paste this into a BLAST search page for me
CGGGAAGTGCTGCTGCTCAGTTAATTCAGTTAATGTTGAGCCCCTCTCAGGTACATAAGACATGCCTACTACGCCCCTACTACGCCCTCGCTAAATGAGTGAGTCTCGAAAGTAGGAGCTGCCCCCGATCCTCAGTTTCTTCGTTTTGAATCTTCGTTTTGAACCATTGCAGCGGAAATAAGGGAGCCATCCTGACCCCATGACCCCAAAATCGATCCCTTGTAAATCGATCCCTTGTAAGTGTATGCAAGAACAAACCTGCTACGAAATCTTTAAAATCTTTATGGGAAGCCGTGTGAAAATGTGTGTGCTTGCCCGGATTGGAAGGGATCTGTTATGCGACGCGATAC

Full Affymetrix probeset data:

Annotations for 1638667_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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