FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638703_a_at:

>probe:Drosophila_2:1638703_a_at:683:679; Interrogation_Position=3047; Antisense; TAGGTGTCCTAGCAGAACGCATCGC
>probe:Drosophila_2:1638703_a_at:414:347; Interrogation_Position=3065; Antisense; GCATCGCTGGCGTTTAGTGTGCCAA
>probe:Drosophila_2:1638703_a_at:703:505; Interrogation_Position=3083; Antisense; GTGCCAATTATTTGCCCAGCTCAAC
>probe:Drosophila_2:1638703_a_at:32:119; Interrogation_Position=3100; Antisense; AGCTCAACGTCCGTTTAAGTGTAAT
>probe:Drosophila_2:1638703_a_at:554:37; Interrogation_Position=3156; Antisense; ATCTTCTAGCTCAAAACTGTGCCAA
>probe:Drosophila_2:1638703_a_at:306:111; Interrogation_Position=3171; Antisense; ACTGTGCCAAAGTCGAAAGTTTATA
>probe:Drosophila_2:1638703_a_at:670:91; Interrogation_Position=3205; Antisense; AGTTTGGTTAGCTTCCGGGCCAGCA
>probe:Drosophila_2:1638703_a_at:189:523; Interrogation_Position=3221; Antisense; GGGCCAGCAGCGATAAACCTTAAGT
>probe:Drosophila_2:1638703_a_at:262:139; Interrogation_Position=3291; Antisense; ACTTACTCAAGTTCGCAATAATCGT
>probe:Drosophila_2:1638703_a_at:544:139; Interrogation_Position=3318; Antisense; GAAAGTATTTTCTCTCCCCTAAATG
>probe:Drosophila_2:1638703_a_at:382:711; Interrogation_Position=3435; Antisense; TTAATTCAATTCATGCGTGACCCGC
>probe:Drosophila_2:1638703_a_at:16:511; Interrogation_Position=3451; Antisense; GTGACCCGCATAATCTTTATTCGCA
>probe:Drosophila_2:1638703_a_at:70:369; Interrogation_Position=3495; Antisense; GAATGCATTAATTAGTTGCCAGGCT
>probe:Drosophila_2:1638703_a_at:718:469; Interrogation_Position=3509; Antisense; GTTGCCAGGCTGAAAAGTTATGTGT

Paste this into a BLAST search page for me
TAGGTGTCCTAGCAGAACGCATCGCGCATCGCTGGCGTTTAGTGTGCCAAGTGCCAATTATTTGCCCAGCTCAACAGCTCAACGTCCGTTTAAGTGTAATATCTTCTAGCTCAAAACTGTGCCAAACTGTGCCAAAGTCGAAAGTTTATAAGTTTGGTTAGCTTCCGGGCCAGCAGGGCCAGCAGCGATAAACCTTAAGTACTTACTCAAGTTCGCAATAATCGTGAAAGTATTTTCTCTCCCCTAAATGTTAATTCAATTCATGCGTGACCCGCGTGACCCGCATAATCTTTATTCGCAGAATGCATTAATTAGTTGCCAGGCTGTTGCCAGGCTGAAAAGTTATGTGT

Full Affymetrix probeset data:

Annotations for 1638703_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720