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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638722_at:

>probe:Drosophila_2:1638722_at:334:415; Interrogation_Position=3562; Antisense; GAGCCACAAGGACACGAACGATCAT
>probe:Drosophila_2:1638722_at:57:299; Interrogation_Position=3637; Antisense; CGCTATTGTGCGATGTTGTTAACTA
>probe:Drosophila_2:1638722_at:9:633; Interrogation_Position=3716; Antisense; TCCCCTTTTTGTAAACTGTGAGAAG
>probe:Drosophila_2:1638722_at:712:495; Interrogation_Position=3780; Antisense; GTCAGTCAGGGCTTTGAGAACATTT
>probe:Drosophila_2:1638722_at:294:385; Interrogation_Position=3797; Antisense; GAACATTTACACATACCTACTCTAC
>probe:Drosophila_2:1638722_at:414:157; Interrogation_Position=3805; Antisense; ACACATACCTACTCTACGCAAATAT
>probe:Drosophila_2:1638722_at:187:391; Interrogation_Position=3849; Antisense; GAAACTAATCAATTGTGCGCTCTAT
>probe:Drosophila_2:1638722_at:159:229; Interrogation_Position=3891; Antisense; AATGTCAGTTGAGCCTGCGTTTTGC
>probe:Drosophila_2:1638722_at:419:315; Interrogation_Position=3903; Antisense; GCCTGCGTTTTGCTTTCAAGACTTT
>probe:Drosophila_2:1638722_at:490:659; Interrogation_Position=4013; Antisense; TAACAACGCTTGGTCATAGAGGAAC
>probe:Drosophila_2:1638722_at:362:197; Interrogation_Position=4073; Antisense; AACGAGTTTCGATGCCGTGTGTGTA
>probe:Drosophila_2:1638722_at:713:317; Interrogation_Position=4086; Antisense; GCCGTGTGTGTAGTAGAATCCATGT
>probe:Drosophila_2:1638722_at:602:491; Interrogation_Position=4109; Antisense; GTAAAAATATATTCCTCATCTCGGG
>probe:Drosophila_2:1638722_at:104:509; Interrogation_Position=4136; Antisense; GTGCGTGTTCAGTTGTGAGCTAGTT

Paste this into a BLAST search page for me
GAGCCACAAGGACACGAACGATCATCGCTATTGTGCGATGTTGTTAACTATCCCCTTTTTGTAAACTGTGAGAAGGTCAGTCAGGGCTTTGAGAACATTTGAACATTTACACATACCTACTCTACACACATACCTACTCTACGCAAATATGAAACTAATCAATTGTGCGCTCTATAATGTCAGTTGAGCCTGCGTTTTGCGCCTGCGTTTTGCTTTCAAGACTTTTAACAACGCTTGGTCATAGAGGAACAACGAGTTTCGATGCCGTGTGTGTAGCCGTGTGTGTAGTAGAATCCATGTGTAAAAATATATTCCTCATCTCGGGGTGCGTGTTCAGTTGTGAGCTAGTT

Full Affymetrix probeset data:

Annotations for 1638722_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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