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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638751_a_at:

>probe:Drosophila_2:1638751_a_at:552:11; Interrogation_Position=1015; Antisense; ATTAGCGAGGTGTTGGTCTACGGCC
>probe:Drosophila_2:1638751_a_at:425:369; Interrogation_Position=1040; Antisense; GAATGAATCGCCTTTCGTTCGAGAC
>probe:Drosophila_2:1638751_a_at:248:637; Interrogation_Position=1052; Antisense; TTTCGTTCGAGACCCAATTTAGTAT
>probe:Drosophila_2:1638751_a_at:308:275; Interrogation_Position=1173; Antisense; CTTTAACGATCATTTCATTTGGCAT
>probe:Drosophila_2:1638751_a_at:538:167; Interrogation_Position=1233; Antisense; AAATGCACTATGTCCGTTATAGCAA
>probe:Drosophila_2:1638751_a_at:464:57; Interrogation_Position=1366; Antisense; ATGATATTTTTAGCCGCCTGCAACG
>probe:Drosophila_2:1638751_a_at:704:123; Interrogation_Position=1377; Antisense; AGCCGCCTGCAACGCTAAGCAAAAA
>probe:Drosophila_2:1638751_a_at:631:453; Interrogation_Position=817; Antisense; GATTACGTTGAAGCGGCGAGAAAGC
>probe:Drosophila_2:1638751_a_at:730:115; Interrogation_Position=911; Antisense; AGCATGAAAGCGACAGCGAGTACGA
>probe:Drosophila_2:1638751_a_at:591:487; Interrogation_Position=930; Antisense; GTACGAGTGCGAGCTGATCGGAAAA
>probe:Drosophila_2:1638751_a_at:171:39; Interrogation_Position=946; Antisense; ATCGGAAAACGGATGGCCAGCCACT
>probe:Drosophila_2:1638751_a_at:162:441; Interrogation_Position=957; Antisense; GATGGCCAGCCACTTCCGGCGTATG
>probe:Drosophila_2:1638751_a_at:170:483; Interrogation_Position=977; Antisense; GTATGCGTCCGGATCAGCGACTTTT
>probe:Drosophila_2:1638751_a_at:461:401; Interrogation_Position=995; Antisense; GACTTTTCGCCGAACGGATCATTAG

Paste this into a BLAST search page for me
ATTAGCGAGGTGTTGGTCTACGGCCGAATGAATCGCCTTTCGTTCGAGACTTTCGTTCGAGACCCAATTTAGTATCTTTAACGATCATTTCATTTGGCATAAATGCACTATGTCCGTTATAGCAAATGATATTTTTAGCCGCCTGCAACGAGCCGCCTGCAACGCTAAGCAAAAAGATTACGTTGAAGCGGCGAGAAAGCAGCATGAAAGCGACAGCGAGTACGAGTACGAGTGCGAGCTGATCGGAAAAATCGGAAAACGGATGGCCAGCCACTGATGGCCAGCCACTTCCGGCGTATGGTATGCGTCCGGATCAGCGACTTTTGACTTTTCGCCGAACGGATCATTAG

Full Affymetrix probeset data:

Annotations for 1638751_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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