FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638828_a_at:

>probe:Drosophila_2:1638828_a_at:632:571; Interrogation_Position=1487; Antisense; GGCTCAAGCCTGCACTGGTTCCATT
>probe:Drosophila_2:1638828_a_at:514:9; Interrogation_Position=1555; Antisense; ATTCGCTTCGGGACCAGGAGGACAT
>probe:Drosophila_2:1638828_a_at:710:75; Interrogation_Position=1570; Antisense; AGGAGGACATTGCATTTCGGCAGCT
>probe:Drosophila_2:1638828_a_at:653:527; Interrogation_Position=1626; Antisense; GGGACATCCCAGGAATTGTGCCTTG
>probe:Drosophila_2:1638828_a_at:261:565; Interrogation_Position=1637; Antisense; GGAATTGTGCCTTGACTTTCTGAAA
>probe:Drosophila_2:1638828_a_at:670:531; Interrogation_Position=1670; Antisense; GGTGGCCCATAACCTATCCAAGGAT
>probe:Drosophila_2:1638828_a_at:185:369; Interrogation_Position=1726; Antisense; GAATGTACCATGAGACGCAACTTTG
>probe:Drosophila_2:1638828_a_at:107:637; Interrogation_Position=1757; Antisense; TCGACACGCCTGAGCAGTAACAATT
>probe:Drosophila_2:1638828_a_at:28:43; Interrogation_Position=1800; Antisense; ATCGAGTTTCAATCTTCGTCTCAAC
>probe:Drosophila_2:1638828_a_at:172:701; Interrogation_Position=1836; Antisense; TTTTGTCTTAAGTCAGCCGACACCT
>probe:Drosophila_2:1638828_a_at:197:263; Interrogation_Position=1853; Antisense; CGACACCTCGAAACTAATCCTAACT
>probe:Drosophila_2:1638828_a_at:582:283; Interrogation_Position=1904; Antisense; CTGAAATCTGGTGTTTTTACTCGCG
>probe:Drosophila_2:1638828_a_at:425:665; Interrogation_Position=1921; Antisense; TACTCGCGTTGTCGTAACCGTAAAG
>probe:Drosophila_2:1638828_a_at:76:435; Interrogation_Position=1983; Antisense; GAGGGCACTTTAACCAATACTGTAC

Paste this into a BLAST search page for me
GGCTCAAGCCTGCACTGGTTCCATTATTCGCTTCGGGACCAGGAGGACATAGGAGGACATTGCATTTCGGCAGCTGGGACATCCCAGGAATTGTGCCTTGGGAATTGTGCCTTGACTTTCTGAAAGGTGGCCCATAACCTATCCAAGGATGAATGTACCATGAGACGCAACTTTGTCGACACGCCTGAGCAGTAACAATTATCGAGTTTCAATCTTCGTCTCAACTTTTGTCTTAAGTCAGCCGACACCTCGACACCTCGAAACTAATCCTAACTCTGAAATCTGGTGTTTTTACTCGCGTACTCGCGTTGTCGTAACCGTAAAGGAGGGCACTTTAACCAATACTGTAC

Full Affymetrix probeset data:

Annotations for 1638828_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720