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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638847_s_at:

>probe:Drosophila_2:1638847_s_at:170:253; Interrogation_Position=1011; Antisense; CAAGATTGAGGAGGCCGTCGACCAC
>probe:Drosophila_2:1638847_s_at:688:75; Interrogation_Position=1043; Antisense; AGGAGACCACCAACTGGGCCGATGA
>probe:Drosophila_2:1638847_s_at:283:437; Interrogation_Position=1108; Antisense; GAGGACACCGTCAAGACCTCCTGGG
>probe:Drosophila_2:1638847_s_at:465:483; Interrogation_Position=1133; Antisense; GTAGCGACGGCCAGTTCTAAGGAAT
>probe:Drosophila_2:1638847_s_at:728:279; Interrogation_Position=1149; Antisense; CTAAGGAATCGTCCGGGCCACAGAT
>probe:Drosophila_2:1638847_s_at:553:65; Interrogation_Position=1172; Antisense; ATGGCACTACATCAGCACAGCGTTT
>probe:Drosophila_2:1638847_s_at:646:111; Interrogation_Position=1185; Antisense; AGCACAGCGTTTTGTCAGGAGCCTT
>probe:Drosophila_2:1638847_s_at:546:553; Interrogation_Position=1202; Antisense; GGAGCCTTTTCAACGGCATAAATAA
>probe:Drosophila_2:1638847_s_at:71:649; Interrogation_Position=740; Antisense; TCATGGAGGCCAGCTACGTGAACAT
>probe:Drosophila_2:1638847_s_at:118:509; Interrogation_Position=769; Antisense; GTGATTGCCTTCACGAACACCGACT
>probe:Drosophila_2:1638847_s_at:100:641; Interrogation_Position=798; Antisense; TCTGCGCTACATCGACATTGCCATT
>probe:Drosophila_2:1638847_s_at:699:401; Interrogation_Position=811; Antisense; GACATTGCCATTCCGTGCAACAACA
>probe:Drosophila_2:1638847_s_at:726:145; Interrogation_Position=845; Antisense; ACTCTATCGGTCTGATGTGGTGGCT
>probe:Drosophila_2:1638847_s_at:601:431; Interrogation_Position=929; Antisense; TAGTCGTCGATCTGTTCTTCTACCG

Paste this into a BLAST search page for me
CAAGATTGAGGAGGCCGTCGACCACAGGAGACCACCAACTGGGCCGATGAGAGGACACCGTCAAGACCTCCTGGGGTAGCGACGGCCAGTTCTAAGGAATCTAAGGAATCGTCCGGGCCACAGATATGGCACTACATCAGCACAGCGTTTAGCACAGCGTTTTGTCAGGAGCCTTGGAGCCTTTTCAACGGCATAAATAATCATGGAGGCCAGCTACGTGAACATGTGATTGCCTTCACGAACACCGACTTCTGCGCTACATCGACATTGCCATTGACATTGCCATTCCGTGCAACAACAACTCTATCGGTCTGATGTGGTGGCTTAGTCGTCGATCTGTTCTTCTACCG

Full Affymetrix probeset data:

Annotations for 1638847_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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