FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638879_a_at:

>probe:Drosophila_2:1638879_a_at:486:7; Interrogation_Position=2139; Antisense; ATTGCCGTGCTTTAACCATCGTTGG
>probe:Drosophila_2:1638879_a_at:697:661; Interrogation_Position=2174; Antisense; TAAATGACGCCCGTTGGTTACCTAG
>probe:Drosophila_2:1638879_a_at:330:441; Interrogation_Position=2200; Antisense; GATGAGCCCGTCGATTTGCCTGGTA
>probe:Drosophila_2:1638879_a_at:422:317; Interrogation_Position=2217; Antisense; GCCTGGTACTCCGATTTTGCAATTT
>probe:Drosophila_2:1638879_a_at:559:143; Interrogation_Position=2251; Antisense; ACTGTGTTGGGTACTGAGTCTGCTC
>probe:Drosophila_2:1638879_a_at:659:87; Interrogation_Position=2267; Antisense; AGTCTGCTCCAAGGGCTCTATACTA
>probe:Drosophila_2:1638879_a_at:560:29; Interrogation_Position=2286; Antisense; ATACTACTTCGTCGTGTCATCGGGA
>probe:Drosophila_2:1638879_a_at:22:413; Interrogation_Position=2309; Antisense; GACCGCCGAGGATGAGTTTCTTTGT
>probe:Drosophila_2:1638879_a_at:68:697; Interrogation_Position=2325; Antisense; TTTCTTTGTACAGCCTCGGGATGGA
>probe:Drosophila_2:1638879_a_at:110:493; Interrogation_Position=2350; Antisense; GTAAGGATGCTCAGCTGGTCGTTCC
>probe:Drosophila_2:1638879_a_at:462:235; Interrogation_Position=2392; Antisense; AATCCATCGGTTTACAAGCCACCAT
>probe:Drosophila_2:1638879_a_at:595:325; Interrogation_Position=2441; Antisense; GCGACGATTCGCCTGTGGAATTCTA
>probe:Drosophila_2:1638879_a_at:724:417; Interrogation_Position=2512; Antisense; GAGCTGGGTATTTCTGGGCACTATA
>probe:Drosophila_2:1638879_a_at:604:175; Interrogation_Position=2551; Antisense; AAACGCGATGCGACTACCCAAAAAT

Paste this into a BLAST search page for me
ATTGCCGTGCTTTAACCATCGTTGGTAAATGACGCCCGTTGGTTACCTAGGATGAGCCCGTCGATTTGCCTGGTAGCCTGGTACTCCGATTTTGCAATTTACTGTGTTGGGTACTGAGTCTGCTCAGTCTGCTCCAAGGGCTCTATACTAATACTACTTCGTCGTGTCATCGGGAGACCGCCGAGGATGAGTTTCTTTGTTTTCTTTGTACAGCCTCGGGATGGAGTAAGGATGCTCAGCTGGTCGTTCCAATCCATCGGTTTACAAGCCACCATGCGACGATTCGCCTGTGGAATTCTAGAGCTGGGTATTTCTGGGCACTATAAAACGCGATGCGACTACCCAAAAAT

Full Affymetrix probeset data:

Annotations for 1638879_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720