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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638887_a_at:

>probe:Drosophila_2:1638887_a_at:433:43; Interrogation_Position=3419; Antisense; ATCGTTTAGCGTTGGAGTGGGCCCT
>probe:Drosophila_2:1638887_a_at:572:321; Interrogation_Position=3439; Antisense; GCCCTTATCCAGTTTCACTCTGAAA
>probe:Drosophila_2:1638887_a_at:6:445; Interrogation_Position=3471; Antisense; GATGATTAACCGTCTGATCCGCGAG
>probe:Drosophila_2:1638887_a_at:368:491; Interrogation_Position=3556; Antisense; GTAAGCTCGGATGCTTCGGCGGATC
>probe:Drosophila_2:1638887_a_at:341:701; Interrogation_Position=3680; Antisense; TTATTATCCGCTTGGCACTGGCCGA
>probe:Drosophila_2:1638887_a_at:551:581; Interrogation_Position=3698; Antisense; TGGCCGAGACCTTCAGCAGTAATTG
>probe:Drosophila_2:1638887_a_at:68:495; Interrogation_Position=3716; Antisense; GTAATTGTGGTGTCCTAGCTCTGGA
>probe:Drosophila_2:1638887_a_at:160:547; Interrogation_Position=3738; Antisense; GGATGAGCCCACCACGAACTTGGAT
>probe:Drosophila_2:1638887_a_at:137:31; Interrogation_Position=3772; Antisense; ATAAACTCGCTATGTGAAGCCCTGA
>probe:Drosophila_2:1638887_a_at:159:615; Interrogation_Position=3786; Antisense; TGAAGCCCTGAATTGCATCGTGGAG
>probe:Drosophila_2:1638887_a_at:91:205; Interrogation_Position=3819; Antisense; AAGCCAGTCCAACTTTATGCTCATC
>probe:Drosophila_2:1638887_a_at:406:705; Interrogation_Position=3833; Antisense; TTATGCTCATCATCATCACTCACGA
>probe:Drosophila_2:1638887_a_at:380:107; Interrogation_Position=3860; Antisense; AGAATTTCGTTTCGTCTCTGGGCAA
>probe:Drosophila_2:1638887_a_at:616:285; Interrogation_Position=3901; Antisense; CGGGTCTTCCGCAACGAGGAGTGCA

Paste this into a BLAST search page for me
ATCGTTTAGCGTTGGAGTGGGCCCTGCCCTTATCCAGTTTCACTCTGAAAGATGATTAACCGTCTGATCCGCGAGGTAAGCTCGGATGCTTCGGCGGATCTTATTATCCGCTTGGCACTGGCCGATGGCCGAGACCTTCAGCAGTAATTGGTAATTGTGGTGTCCTAGCTCTGGAGGATGAGCCCACCACGAACTTGGATATAAACTCGCTATGTGAAGCCCTGATGAAGCCCTGAATTGCATCGTGGAGAAGCCAGTCCAACTTTATGCTCATCTTATGCTCATCATCATCACTCACGAAGAATTTCGTTTCGTCTCTGGGCAACGGGTCTTCCGCAACGAGGAGTGCA

Full Affymetrix probeset data:

Annotations for 1638887_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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