FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638899_s_at:

>probe:Drosophila_2:1638899_s_at:476:127; Interrogation_Position=1304; Antisense; ACCAGAGCCTGGTGGCCAAGGTCAT
>probe:Drosophila_2:1638899_s_at:89:649; Interrogation_Position=1493; Antisense; TCAGTATCATCATCAGCAGAACCAG
>probe:Drosophila_2:1638899_s_at:458:129; Interrogation_Position=1537; Antisense; ACCTACGGCGGCAGGACGACGATGA
>probe:Drosophila_2:1638899_s_at:359:549; Interrogation_Position=1577; Antisense; GGAGGAGCACGAACCCACCATGGAG
>probe:Drosophila_2:1638899_s_at:512:261; Interrogation_Position=1592; Antisense; CACCATGGAGCGGTTCAAGCGTAAA
>probe:Drosophila_2:1638899_s_at:240:29; Interrogation_Position=1608; Antisense; AAGCGTAAAGTCTCCGTCTTCTTCA
>probe:Drosophila_2:1638899_s_at:272:555; Interrogation_Position=1635; Antisense; GGACCCACCATCAAGCGTATTTGAG
>probe:Drosophila_2:1638899_s_at:345:431; Interrogation_Position=1668; Antisense; GAGTACAAACACTGGTCACCAAGGT
>probe:Drosophila_2:1638899_s_at:195:651; Interrogation_Position=1683; Antisense; TCACCAAGGTTGTTGCATTGCTGCT
>probe:Drosophila_2:1638899_s_at:158:345; Interrogation_Position=1697; Antisense; GCATTGCTGCTTGATTGGATAGTTA
>probe:Drosophila_2:1638899_s_at:653:703; Interrogation_Position=1719; Antisense; TTAGGATCCACCTCTACATCATATA
>probe:Drosophila_2:1638899_s_at:92:427; Interrogation_Position=1759; Antisense; GAGAGAGAGCTTATCGATCGATCGA
>probe:Drosophila_2:1638899_s_at:650:699; Interrogation_Position=1792; Antisense; TTTTCATTTCGGTTTCCTGTCCAAG
>probe:Drosophila_2:1638899_s_at:38:695; Interrogation_Position=1804; Antisense; TTTCCTGTCCAAGCTTCAACTATGA

Paste this into a BLAST search page for me
ACCAGAGCCTGGTGGCCAAGGTCATTCAGTATCATCATCAGCAGAACCAGACCTACGGCGGCAGGACGACGATGAGGAGGAGCACGAACCCACCATGGAGCACCATGGAGCGGTTCAAGCGTAAAAAGCGTAAAGTCTCCGTCTTCTTCAGGACCCACCATCAAGCGTATTTGAGGAGTACAAACACTGGTCACCAAGGTTCACCAAGGTTGTTGCATTGCTGCTGCATTGCTGCTTGATTGGATAGTTATTAGGATCCACCTCTACATCATATAGAGAGAGAGCTTATCGATCGATCGATTTTCATTTCGGTTTCCTGTCCAAGTTTCCTGTCCAAGCTTCAACTATGA

Full Affymetrix probeset data:

Annotations for 1638899_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720