FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638903_at:

>probe:Drosophila_2:1638903_at:652:321; Interrogation_Position=1105; Antisense; GCCCACCCGAACATAAAGCTATTTA
>probe:Drosophila_2:1638903_at:275:533; Interrogation_Position=1147; Antisense; GGTGGCATAACCGAAGCTCAATATC
>probe:Drosophila_2:1638903_at:491:249; Interrogation_Position=1165; Antisense; CAATATCACGGAAAGCCTATGCTAT
>probe:Drosophila_2:1638903_at:204:683; Interrogation_Position=1182; Antisense; TATGCTATCCTTGCCTGTATTTGGG
>probe:Drosophila_2:1638903_at:228:541; Interrogation_Position=1243; Antisense; GGATTTGGCCTTACCCAGAGTCTGC
>probe:Drosophila_2:1638903_at:614:265; Interrogation_Position=1258; Antisense; CAGAGTCTGCTCTCTCTAGAGGAGC
>probe:Drosophila_2:1638903_at:505:439; Interrogation_Position=1294; Antisense; GAGGCTATCCTAGAGATCTTGTCGA
>probe:Drosophila_2:1638903_at:328:635; Interrogation_Position=1315; Antisense; TCGAATCCGCAGTATTTTGACAAGG
>probe:Drosophila_2:1638903_at:158:701; Interrogation_Position=1329; Antisense; TTTTGACAAGGTGGCTTCGTTCTCC
>probe:Drosophila_2:1638903_at:121:717; Interrogation_Position=1344; Antisense; TTCGTTCTCCTCTCTGTACAGGGAT
>probe:Drosophila_2:1638903_at:5:123; Interrogation_Position=1378; Antisense; AGCGCTAGGGAATCGGTGATCTACT
>probe:Drosophila_2:1638903_at:496:683; Interrogation_Position=1495; Antisense; TATGCTCTAATTGCAGTCGTTCTAG
>probe:Drosophila_2:1638903_at:116:495; Interrogation_Position=1519; Antisense; GTAATTCTAGTACTGCTTCTCAAAT
>probe:Drosophila_2:1638903_at:708:717; Interrogation_Position=1543; Antisense; TTGCTGCTGCAATTTATCTATAGGA

Paste this into a BLAST search page for me
GCCCACCCGAACATAAAGCTATTTAGGTGGCATAACCGAAGCTCAATATCCAATATCACGGAAAGCCTATGCTATTATGCTATCCTTGCCTGTATTTGGGGGATTTGGCCTTACCCAGAGTCTGCCAGAGTCTGCTCTCTCTAGAGGAGCGAGGCTATCCTAGAGATCTTGTCGATCGAATCCGCAGTATTTTGACAAGGTTTTGACAAGGTGGCTTCGTTCTCCTTCGTTCTCCTCTCTGTACAGGGATAGCGCTAGGGAATCGGTGATCTACTTATGCTCTAATTGCAGTCGTTCTAGGTAATTCTAGTACTGCTTCTCAAATTTGCTGCTGCAATTTATCTATAGGA

Full Affymetrix probeset data:

Annotations for 1638903_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720