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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638951_at:

>probe:Drosophila_2:1638951_at:683:275; Interrogation_Position=2832; Antisense; CTTTGCGAACATGAGATCCTCGACT
>probe:Drosophila_2:1638951_at:499:623; Interrogation_Position=2835; Antisense; TGCGAACATGAGATCCTCGACTCGG
>probe:Drosophila_2:1638951_at:182:529; Interrogation_Position=3182; Antisense; GGGAGGGCCACATCGTCAGCCATCA
>probe:Drosophila_2:1638951_at:218:153; Interrogation_Position=3191; Antisense; ACATCGTCAGCCATCAGTAAGCCAT
>probe:Drosophila_2:1638951_at:611:649; Interrogation_Position=3197; Antisense; TCAGCCATCAGTAAGCCATCGTCAG
>probe:Drosophila_2:1638951_at:719:29; Interrogation_Position=3203; Antisense; ATCAGTAAGCCATCGTCAGTTCCTG
>probe:Drosophila_2:1638951_at:37:659; Interrogation_Position=3208; Antisense; TAAGCCATCGTCAGTTCCTGGAGAC
>probe:Drosophila_2:1638951_at:277:41; Interrogation_Position=3214; Antisense; ATCGTCAGTTCCTGGAGACCTCAGT
>probe:Drosophila_2:1638951_at:55:425; Interrogation_Position=3228; Antisense; GAGACCTCAGTTGCCGGATCAGTAT
>probe:Drosophila_2:1638951_at:97:649; Interrogation_Position=3234; Antisense; TCAGTTGCCGGATCAGTATTGAGCA
>probe:Drosophila_2:1638951_at:642:453; Interrogation_Position=3244; Antisense; GATCAGTATTGAGCATGCGACGTAC
>probe:Drosophila_2:1638951_at:384:419; Interrogation_Position=3254; Antisense; GAGCATGCGACGTACTAAGTTGTTA
>probe:Drosophila_2:1638951_at:398:407; Interrogation_Position=3262; Antisense; GACGTACTAAGTTGTTAGCACCTAG
>probe:Drosophila_2:1638951_at:642:655; Interrogation_Position=3269; Antisense; TAAGTTGTTAGCACCTAGAACGTAG

Paste this into a BLAST search page for me
CTTTGCGAACATGAGATCCTCGACTTGCGAACATGAGATCCTCGACTCGGGGGAGGGCCACATCGTCAGCCATCAACATCGTCAGCCATCAGTAAGCCATTCAGCCATCAGTAAGCCATCGTCAGATCAGTAAGCCATCGTCAGTTCCTGTAAGCCATCGTCAGTTCCTGGAGACATCGTCAGTTCCTGGAGACCTCAGTGAGACCTCAGTTGCCGGATCAGTATTCAGTTGCCGGATCAGTATTGAGCAGATCAGTATTGAGCATGCGACGTACGAGCATGCGACGTACTAAGTTGTTAGACGTACTAAGTTGTTAGCACCTAGTAAGTTGTTAGCACCTAGAACGTAG

Full Affymetrix probeset data:

Annotations for 1638951_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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