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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638953_a_at:

>probe:Drosophila_2:1638953_a_at:689:383; Interrogation_Position=2616; Antisense; GAACTTCAGTTCATGCTGTTATGTA
>probe:Drosophila_2:1638953_a_at:703:601; Interrogation_Position=2637; Antisense; TGTATTTCTGTGTAGCGTAGCATTT
>probe:Drosophila_2:1638953_a_at:91:329; Interrogation_Position=2651; Antisense; GCGTAGCATTTGTCTTGCATTCGAT
>probe:Drosophila_2:1638953_a_at:220:485; Interrogation_Position=2684; Antisense; GTAGTTTTCTTGTAGTTCTTGCTCA
>probe:Drosophila_2:1638953_a_at:140:473; Interrogation_Position=2698; Antisense; GTTCTTGCTCAACAAAGCCATGTCA
>probe:Drosophila_2:1638953_a_at:481:307; Interrogation_Position=2715; Antisense; CCATGTCAGCTCAACCAATTGTAAA
>probe:Drosophila_2:1638953_a_at:627:111; Interrogation_Position=2767; Antisense; AGCAACGGTCCTCACTTTTGTAAAT
>probe:Drosophila_2:1638953_a_at:62:601; Interrogation_Position=2785; Antisense; TGTAAATGTCTCCTTCATTCGACCC
>probe:Drosophila_2:1638953_a_at:673:7; Interrogation_Position=2801; Antisense; ATTCGACCCAAATTGTGCTAACATT
>probe:Drosophila_2:1638953_a_at:39:71; Interrogation_Position=2837; Antisense; AGGCGACTAACTCCCTAAGTGAAAT
>probe:Drosophila_2:1638953_a_at:572:279; Interrogation_Position=2879; Antisense; CTACAACACCTCTTCCTGGTAAAAT
>probe:Drosophila_2:1638953_a_at:4:87; Interrogation_Position=2909; Antisense; AGTGCCTGTGAGACAAACTCGGATC
>probe:Drosophila_2:1638953_a_at:564:279; Interrogation_Position=2926; Antisense; CTCGGATCGGAGGTTGCAATAATTT
>probe:Drosophila_2:1638953_a_at:666:689; Interrogation_Position=2950; Antisense; TTAAATCGAACCCATGCATATACAG

Paste this into a BLAST search page for me
GAACTTCAGTTCATGCTGTTATGTATGTATTTCTGTGTAGCGTAGCATTTGCGTAGCATTTGTCTTGCATTCGATGTAGTTTTCTTGTAGTTCTTGCTCAGTTCTTGCTCAACAAAGCCATGTCACCATGTCAGCTCAACCAATTGTAAAAGCAACGGTCCTCACTTTTGTAAATTGTAAATGTCTCCTTCATTCGACCCATTCGACCCAAATTGTGCTAACATTAGGCGACTAACTCCCTAAGTGAAATCTACAACACCTCTTCCTGGTAAAATAGTGCCTGTGAGACAAACTCGGATCCTCGGATCGGAGGTTGCAATAATTTTTAAATCGAACCCATGCATATACAG

Full Affymetrix probeset data:

Annotations for 1638953_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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