FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1638998_at:

>probe:Drosophila_2:1638998_at:393:461; Interrogation_Position=2932; Antisense; GATTTTAATCTCAACGCCGACGTGC
>probe:Drosophila_2:1638998_at:477:319; Interrogation_Position=2968; Antisense; GCCCTTTTTCTGTCTACGGAATTGG
>probe:Drosophila_2:1638998_at:309:561; Interrogation_Position=3008; Antisense; GGAAACGTGATTCGCTACTGACATT
>probe:Drosophila_2:1638998_at:116:151; Interrogation_Position=3028; Antisense; ACATTGCGCCCTCAGAGCATTTAAA
>probe:Drosophila_2:1638998_at:418:345; Interrogation_Position=3044; Antisense; GCATTTAAAAGACCCACACTCCAAT
>probe:Drosophila_2:1638998_at:112:513; Interrogation_Position=3085; Antisense; GTGTCCACGTCCTGTATTTGTGAAA
>probe:Drosophila_2:1638998_at:441:601; Interrogation_Position=3113; Antisense; TGTATTTTTATATTGGCCCACTGGC
>probe:Drosophila_2:1638998_at:18:337; Interrogation_Position=3136; Antisense; GCTGCTCTGCGTAGCTCTAGATATT
>probe:Drosophila_2:1638998_at:332:275; Interrogation_Position=3173; Antisense; CTACATGCACCCTGGAAATTCCGAA
>probe:Drosophila_2:1638998_at:661:253; Interrogation_Position=3250; Antisense; CAACCTGCTGTTTTCTATGTGTGTA
>probe:Drosophila_2:1638998_at:491:601; Interrogation_Position=3271; Antisense; TGTAGTTATCCCTTGTTTGTTTCCG
>probe:Drosophila_2:1638998_at:412:287; Interrogation_Position=3300; Antisense; CTGGTCTTCTGTTGATTCTTGGGTA
>probe:Drosophila_2:1638998_at:414:531; Interrogation_Position=3320; Antisense; GGGTATTTTGCAATGTTCCACGTGA
>probe:Drosophila_2:1638998_at:514:145; Interrogation_Position=3346; Antisense; ACTCACACACCTCCTGAAGATTGAT

Paste this into a BLAST search page for me
GATTTTAATCTCAACGCCGACGTGCGCCCTTTTTCTGTCTACGGAATTGGGGAAACGTGATTCGCTACTGACATTACATTGCGCCCTCAGAGCATTTAAAGCATTTAAAAGACCCACACTCCAATGTGTCCACGTCCTGTATTTGTGAAATGTATTTTTATATTGGCCCACTGGCGCTGCTCTGCGTAGCTCTAGATATTCTACATGCACCCTGGAAATTCCGAACAACCTGCTGTTTTCTATGTGTGTATGTAGTTATCCCTTGTTTGTTTCCGCTGGTCTTCTGTTGATTCTTGGGTAGGGTATTTTGCAATGTTCCACGTGAACTCACACACCTCCTGAAGATTGAT

Full Affymetrix probeset data:

Annotations for 1638998_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720