FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639064_s_at:

>probe:Drosophila_2:1639064_s_at:256:357; Interrogation_Position=3088; Antisense; GCAACTAAAAGTTATATTCAGGCAG
>probe:Drosophila_2:1639064_s_at:258:289; Interrogation_Position=3134; Antisense; CGGCAACAGCAAAATGATTACAATT
>probe:Drosophila_2:1639064_s_at:17:459; Interrogation_Position=3149; Antisense; GATTACAATTGACGCCATTTTTTAT
>probe:Drosophila_2:1639064_s_at:378:257; Interrogation_Position=3255; Antisense; CAAAGGATGTATGTGTCGTGTGGAA
>probe:Drosophila_2:1639064_s_at:244:595; Interrogation_Position=3268; Antisense; TGTCGTGTGGAAAATGGAAGTCACC
>probe:Drosophila_2:1639064_s_at:658:563; Interrogation_Position=3283; Antisense; GGAAGTCACCATTTGAGGCCACAGA
>probe:Drosophila_2:1639064_s_at:725:495; Interrogation_Position=3287; Antisense; GTCACCATTTGAGGCCACAGAAAAG
>probe:Drosophila_2:1639064_s_at:383:603; Interrogation_Position=3296; Antisense; TGAGGCCACAGAAAAGGTTTAACCT
>probe:Drosophila_2:1639064_s_at:394:483; Interrogation_Position=3338; Antisense; GTATCTTTGTCATTTCATTTTTGGC
>probe:Drosophila_2:1639064_s_at:709:277; Interrogation_Position=3342; Antisense; CTTTGTCATTTCATTTTTGGCATTG
>probe:Drosophila_2:1639064_s_at:694:481; Interrogation_Position=3387; Antisense; GTATACTTAGAGCAAGTCAGCAAAA
>probe:Drosophila_2:1639064_s_at:95:165; Interrogation_Position=3421; Antisense; AAATCAACCACAACAGACTTACAAA
>probe:Drosophila_2:1639064_s_at:156:1; Interrogation_Position=3434; Antisense; CAGACTTACAAATAGTTCCAAAAGG
>probe:Drosophila_2:1639064_s_at:57:23; Interrogation_Position=3629; Antisense; ATCAAGTTCGGGAATTTCAACTGAA

Paste this into a BLAST search page for me
GCAACTAAAAGTTATATTCAGGCAGCGGCAACAGCAAAATGATTACAATTGATTACAATTGACGCCATTTTTTATCAAAGGATGTATGTGTCGTGTGGAATGTCGTGTGGAAAATGGAAGTCACCGGAAGTCACCATTTGAGGCCACAGAGTCACCATTTGAGGCCACAGAAAAGTGAGGCCACAGAAAAGGTTTAACCTGTATCTTTGTCATTTCATTTTTGGCCTTTGTCATTTCATTTTTGGCATTGGTATACTTAGAGCAAGTCAGCAAAAAAATCAACCACAACAGACTTACAAACAGACTTACAAATAGTTCCAAAAGGATCAAGTTCGGGAATTTCAACTGAA

Full Affymetrix probeset data:

Annotations for 1639064_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720