FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639069_at:

>probe:Drosophila_2:1639069_at:643:29; Interrogation_Position=1571; Antisense; ATAATTTGCTTCTCATTTGTGGCCT
>probe:Drosophila_2:1639069_at:203:647; Interrogation_Position=1583; Antisense; TCATTTGTGGCCTTTACTTGTGTTC
>probe:Drosophila_2:1639069_at:677:535; Interrogation_Position=1590; Antisense; TGGCCTTTACTTGTGTTCCTTATAG
>probe:Drosophila_2:1639069_at:20:275; Interrogation_Position=1599; Antisense; CTTGTGTTCCTTATAGTTGCGATTT
>probe:Drosophila_2:1639069_at:119:95; Interrogation_Position=1613; Antisense; AGTTGCGATTTTTGATTACAGTAAA
>probe:Drosophila_2:1639069_at:143:489; Interrogation_Position=1633; Antisense; GTAAATGTTTGACTGATGAAATGCA
>probe:Drosophila_2:1639069_at:153:93; Interrogation_Position=1657; Antisense; AGATAAGAATTTTGCCTCCTCCTAT
>probe:Drosophila_2:1639069_at:669:281; Interrogation_Position=1672; Antisense; CTCCTCCTATTTCGCATTGTTGTGC
>probe:Drosophila_2:1639069_at:150:5; Interrogation_Position=1687; Antisense; ATTGTTGTGCAAACCTCGCTGTTTA
>probe:Drosophila_2:1639069_at:678:493; Interrogation_Position=1693; Antisense; GTGCAAACCTCGCTGTTTAAAGAGA
>probe:Drosophila_2:1639069_at:616:425; Interrogation_Position=1714; Antisense; GAGATGTTACTAAAGGATGTTACTA
>probe:Drosophila_2:1639069_at:352:443; Interrogation_Position=1729; Antisense; GATGTTACTAAAAGGCATTCCGACA
>probe:Drosophila_2:1639069_at:638:223; Interrogation_Position=1740; Antisense; AAGGCATTCCGACAGAAATCAAAAT
>probe:Drosophila_2:1639069_at:114:663; Interrogation_Position=1764; Antisense; TAAAACATATCTTCTACTGAGCATA

Paste this into a BLAST search page for me
ATAATTTGCTTCTCATTTGTGGCCTTCATTTGTGGCCTTTACTTGTGTTCTGGCCTTTACTTGTGTTCCTTATAGCTTGTGTTCCTTATAGTTGCGATTTAGTTGCGATTTTTGATTACAGTAAAGTAAATGTTTGACTGATGAAATGCAAGATAAGAATTTTGCCTCCTCCTATCTCCTCCTATTTCGCATTGTTGTGCATTGTTGTGCAAACCTCGCTGTTTAGTGCAAACCTCGCTGTTTAAAGAGAGAGATGTTACTAAAGGATGTTACTAGATGTTACTAAAAGGCATTCCGACAAAGGCATTCCGACAGAAATCAAAATTAAAACATATCTTCTACTGAGCATA

Full Affymetrix probeset data:

Annotations for 1639069_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720