FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639071_a_at:

>probe:Drosophila_2:1639071_a_at:653:23; Interrogation_Position=1402; Antisense; ATATCGAGGACTTGCTCTGCAGCTA
>probe:Drosophila_2:1639071_a_at:240:399; Interrogation_Position=1428; Antisense; GACACCCTGTACTACAAACCGAAGT
>probe:Drosophila_2:1639071_a_at:427:469; Interrogation_Position=1451; Antisense; GTTGCTAATCATACAAGCCTGCCAG
>probe:Drosophila_2:1639071_a_at:528:77; Interrogation_Position=1515; Antisense; AGGATAGACGTGACCACCGTGTCGC
>probe:Drosophila_2:1639071_a_at:50:113; Interrogation_Position=1546; Antisense; AGCACATCGACATGCTGCGGGCCAT
>probe:Drosophila_2:1639071_a_at:54:665; Interrogation_Position=1579; Antisense; TAAATGGATATGCTGCTCTGCGCCA
>probe:Drosophila_2:1639071_a_at:46:311; Interrogation_Position=1600; Antisense; GCCACACCCAAACAGGTAGCTGGTT
>probe:Drosophila_2:1639071_a_at:711:703; Interrogation_Position=1624; Antisense; TTATCGGGAGCCTGTGCGATGCCAT
>probe:Drosophila_2:1639071_a_at:320:633; Interrogation_Position=1675; Antisense; TCGCCGATATCCTGACGATTGTCAC
>probe:Drosophila_2:1639071_a_at:433:409; Interrogation_Position=1731; Antisense; GACGAGTCCATGGTGCCGAATGTTA
>probe:Drosophila_2:1639071_a_at:644:709; Interrogation_Position=1753; Antisense; TTAAAAGCACATTTCGCCAGCACGT
>probe:Drosophila_2:1639071_a_at:512:629; Interrogation_Position=1784; Antisense; TCCACCTCGTCTGTGATTTTGGTTT
>probe:Drosophila_2:1639071_a_at:653:193; Interrogation_Position=1811; Antisense; AACGTTAGCGCAGTTGTACGTCCAC
>probe:Drosophila_2:1639071_a_at:337:489; Interrogation_Position=1826; Antisense; GTACGTCCACTCAAATTGCTCTATA

Paste this into a BLAST search page for me
ATATCGAGGACTTGCTCTGCAGCTAGACACCCTGTACTACAAACCGAAGTGTTGCTAATCATACAAGCCTGCCAGAGGATAGACGTGACCACCGTGTCGCAGCACATCGACATGCTGCGGGCCATTAAATGGATATGCTGCTCTGCGCCAGCCACACCCAAACAGGTAGCTGGTTTTATCGGGAGCCTGTGCGATGCCATTCGCCGATATCCTGACGATTGTCACGACGAGTCCATGGTGCCGAATGTTATTAAAAGCACATTTCGCCAGCACGTTCCACCTCGTCTGTGATTTTGGTTTAACGTTAGCGCAGTTGTACGTCCACGTACGTCCACTCAAATTGCTCTATA

Full Affymetrix probeset data:

Annotations for 1639071_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720