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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639075_a_at:

>probe:Drosophila_2:1639075_a_at:343:393; Interrogation_Position=1264; Antisense; GAAAGTTGCCAAAGTCTTGCACATG
>probe:Drosophila_2:1639075_a_at:329:605; Interrogation_Position=1294; Antisense; TGATAAACGACAGTGGGCCGCCATT
>probe:Drosophila_2:1639075_a_at:5:11; Interrogation_Position=1316; Antisense; ATTCTCATCCTATCCGGACTGTTAT
>probe:Drosophila_2:1639075_a_at:334:275; Interrogation_Position=1325; Antisense; CTATCCGGACTGTTATTGTTTGTGA
>probe:Drosophila_2:1639075_a_at:140:495; Interrogation_Position=1369; Antisense; GTAATTGCTTTCGTTGTTCCCAAAT
>probe:Drosophila_2:1639075_a_at:379:343; Interrogation_Position=1433; Antisense; GCTTGCTTTTGAATTCGGGCTCTTA
>probe:Drosophila_2:1639075_a_at:16:291; Interrogation_Position=1448; Antisense; CGGGCTCTTAATTACAATTCCATGT
>probe:Drosophila_2:1639075_a_at:455:247; Interrogation_Position=1463; Antisense; AATTCCATGTAAACTCCCTTGCTGT
>probe:Drosophila_2:1639075_a_at:676:177; Interrogation_Position=1473; Antisense; AAACTCCCTTGCTGTATATACACGG
>probe:Drosophila_2:1639075_a_at:692:707; Interrogation_Position=1505; Antisense; TTAACCTGATTTATTACCAGCCGCC
>probe:Drosophila_2:1639075_a_at:399:125; Interrogation_Position=1523; Antisense; AGCCGCCTCTCTCTATATATATATA
>probe:Drosophila_2:1639075_a_at:544:203; Interrogation_Position=1630; Antisense; AACCAAGTGCTCCAGAGTTCTGTCA
>probe:Drosophila_2:1639075_a_at:430:93; Interrogation_Position=1645; Antisense; AGTTCTGTCATTCCCAATTTGGCCA
>probe:Drosophila_2:1639075_a_at:652:689; Interrogation_Position=1662; Antisense; TTTGGCCAAAGGATACTGCAACTGT

Paste this into a BLAST search page for me
GAAAGTTGCCAAAGTCTTGCACATGTGATAAACGACAGTGGGCCGCCATTATTCTCATCCTATCCGGACTGTTATCTATCCGGACTGTTATTGTTTGTGAGTAATTGCTTTCGTTGTTCCCAAATGCTTGCTTTTGAATTCGGGCTCTTACGGGCTCTTAATTACAATTCCATGTAATTCCATGTAAACTCCCTTGCTGTAAACTCCCTTGCTGTATATACACGGTTAACCTGATTTATTACCAGCCGCCAGCCGCCTCTCTCTATATATATATAAACCAAGTGCTCCAGAGTTCTGTCAAGTTCTGTCATTCCCAATTTGGCCATTTGGCCAAAGGATACTGCAACTGT

Full Affymetrix probeset data:

Annotations for 1639075_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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