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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639086_s_at:

>probe:Drosophila_2:1639086_s_at:421:123; Interrogation_Position=1348; Antisense; AGCGCATGGCCTACGATGAGGACGA
>probe:Drosophila_2:1639086_s_at:325:67; Interrogation_Position=1372; Antisense; ATGGCGGCTATCAGGATGGCCCACG
>probe:Drosophila_2:1639086_s_at:559:329; Interrogation_Position=1396; Antisense; GCGTCCAGCAGTGCACATCGAGTTA
>probe:Drosophila_2:1639086_s_at:418:611; Interrogation_Position=1461; Antisense; TAATAATACCCCAACCAACAAGCCG
>probe:Drosophila_2:1639086_s_at:562:241; Interrogation_Position=1490; Antisense; AATATGTAAACCAGCTCCCGGAACA
>probe:Drosophila_2:1639086_s_at:352:289; Interrogation_Position=1508; Antisense; CGGAACACTGTAATTGCGCTTGCAA
>probe:Drosophila_2:1639086_s_at:108:721; Interrogation_Position=1527; Antisense; TTGCAAGTGCCGAAGAACTCCCAAA
>probe:Drosophila_2:1639086_s_at:689:661; Interrogation_Position=1559; Antisense; TAAAACACCATCCAATTCACACTAG
>probe:Drosophila_2:1639086_s_at:152:257; Interrogation_Position=1578; Antisense; CACTAGGAGGCCCAACCAATCGAGA
>probe:Drosophila_2:1639086_s_at:3:217; Interrogation_Position=1609; Antisense; AAGTTATTTCATGCAAGCTACGATA
>probe:Drosophila_2:1639086_s_at:342:617; Interrogation_Position=1668; Antisense; TGCACTATGTCTATAACGCGTGGTT
>probe:Drosophila_2:1639086_s_at:541:161; Interrogation_Position=1785; Antisense; AAATTAGCCGCCACTAGAACCGTAT
>probe:Drosophila_2:1639086_s_at:158:109; Interrogation_Position=1800; Antisense; AGAACCGTATCTAAAGTCCGCGCCA
>probe:Drosophila_2:1639086_s_at:143:323; Interrogation_Position=1819; Antisense; GCGCCAGCGAACACGTCTAGGAACA

Paste this into a BLAST search page for me
AGCGCATGGCCTACGATGAGGACGAATGGCGGCTATCAGGATGGCCCACGGCGTCCAGCAGTGCACATCGAGTTATAATAATACCCCAACCAACAAGCCGAATATGTAAACCAGCTCCCGGAACACGGAACACTGTAATTGCGCTTGCAATTGCAAGTGCCGAAGAACTCCCAAATAAAACACCATCCAATTCACACTAGCACTAGGAGGCCCAACCAATCGAGAAAGTTATTTCATGCAAGCTACGATATGCACTATGTCTATAACGCGTGGTTAAATTAGCCGCCACTAGAACCGTATAGAACCGTATCTAAAGTCCGCGCCAGCGCCAGCGAACACGTCTAGGAACA

Full Affymetrix probeset data:

Annotations for 1639086_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime