FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639109_a_at:

>probe:Drosophila_2:1639109_a_at:278:89; Interrogation_Position=1990; Antisense; AGTCTGCGCTCATTCGACAACTAAA
>probe:Drosophila_2:1639109_a_at:580:287; Interrogation_Position=2015; Antisense; CTGGCATTTAATATAGATCCCTGAA
>probe:Drosophila_2:1639109_a_at:555:537; Interrogation_Position=2106; Antisense; GGTATCATAGACTCTGCTTCGTCAT
>probe:Drosophila_2:1639109_a_at:67:147; Interrogation_Position=2116; Antisense; ACTCTGCTTCGTCATTTTGTATTTA
>probe:Drosophila_2:1639109_a_at:436:381; Interrogation_Position=2141; Antisense; GAACCGATTGCCTCTTGTTGATACA
>probe:Drosophila_2:1639109_a_at:249:163; Interrogation_Position=2219; Antisense; AAATCAAACATTATGGCTGCTTAGG
>probe:Drosophila_2:1639109_a_at:442:335; Interrogation_Position=2234; Antisense; GCTGCTTAGGTATTTTTCGCTGAAA
>probe:Drosophila_2:1639109_a_at:430:549; Interrogation_Position=2290; Antisense; GGAGATTTAGCACAATTTAACTCTG
>probe:Drosophila_2:1639109_a_at:481:473; Interrogation_Position=2314; Antisense; GTTAAATTCATGACACTATTGCAAT
>probe:Drosophila_2:1639109_a_at:196:5; Interrogation_Position=2337; Antisense; ATTGTTTATTGATTACCCGATTCGA
>probe:Drosophila_2:1639109_a_at:671:671; Interrogation_Position=2350; Antisense; TACCCGATTCGAAGTAGAGCACATC
>probe:Drosophila_2:1639109_a_at:309:271; Interrogation_Position=2371; Antisense; CATCGATCATGCCACGTGAGACAAA
>probe:Drosophila_2:1639109_a_at:511:599; Interrogation_Position=2399; Antisense; TGCTTGGGAGCAAATTCGGCATTTA
>probe:Drosophila_2:1639109_a_at:180:639; Interrogation_Position=2414; Antisense; TCGGCATTTAATCTGAGGATGTCTA

Paste this into a BLAST search page for me
AGTCTGCGCTCATTCGACAACTAAACTGGCATTTAATATAGATCCCTGAAGGTATCATAGACTCTGCTTCGTCATACTCTGCTTCGTCATTTTGTATTTAGAACCGATTGCCTCTTGTTGATACAAAATCAAACATTATGGCTGCTTAGGGCTGCTTAGGTATTTTTCGCTGAAAGGAGATTTAGCACAATTTAACTCTGGTTAAATTCATGACACTATTGCAATATTGTTTATTGATTACCCGATTCGATACCCGATTCGAAGTAGAGCACATCCATCGATCATGCCACGTGAGACAAATGCTTGGGAGCAAATTCGGCATTTATCGGCATTTAATCTGAGGATGTCTA

Full Affymetrix probeset data:

Annotations for 1639109_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720