FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639139_a_at:

>probe:Drosophila_2:1639139_a_at:643:399; Interrogation_Position=2813; Antisense; GTCAGCGCTTTTAAAGTACGTTACG
>probe:Drosophila_2:1639139_a_at:504:671; Interrogation_Position=2834; Antisense; TACGTCCGAGGACTTGACAACGAGT
>probe:Drosophila_2:1639139_a_at:445:253; Interrogation_Position=2851; Antisense; CAACGAGTTGCCTGTATTTATGAGA
>probe:Drosophila_2:1639139_a_at:33:429; Interrogation_Position=2872; Antisense; GAGATAGCACATACCTACTATACAT
>probe:Drosophila_2:1639139_a_at:313:489; Interrogation_Position=2967; Antisense; GTACTGTAGTGTGTGTTTGCCTGAC
>probe:Drosophila_2:1639139_a_at:6:481; Interrogation_Position=2981; Antisense; GTTTGCCTGACTGAGCGTATGTTAT
>probe:Drosophila_2:1639139_a_at:550:177; Interrogation_Position=3090; Antisense; AAACTGATATTGTGTGTCTGCTTGA
>probe:Drosophila_2:1639139_a_at:271:597; Interrogation_Position=3104; Antisense; TGTCTGCTTGAAGAACGGCGTTCGT
>probe:Drosophila_2:1639139_a_at:81:289; Interrogation_Position=3119; Antisense; CGGCGTTCGTAACCTAAGCTCATGA
>probe:Drosophila_2:1639139_a_at:280:681; Interrogation_Position=3205; Antisense; TATGCAATCCCTACGTTTGTCAATT
>probe:Drosophila_2:1639139_a_at:360:15; Interrogation_Position=3272; Antisense; ATTTACATTTCTACTTCGACTACGA
>probe:Drosophila_2:1639139_a_at:180:635; Interrogation_Position=3287; Antisense; TCGACTACGATTATGTTTACTCTAA
>probe:Drosophila_2:1639139_a_at:601:207; Interrogation_Position=3332; Antisense; AAGCTTTAAGTTTTGCTGCGCTGCT
>probe:Drosophila_2:1639139_a_at:567:621; Interrogation_Position=3345; Antisense; TGCTGCGCTGCTGAAGTGAATAAAT

Paste this into a BLAST search page for me
GTCAGCGCTTTTAAAGTACGTTACGTACGTCCGAGGACTTGACAACGAGTCAACGAGTTGCCTGTATTTATGAGAGAGATAGCACATACCTACTATACATGTACTGTAGTGTGTGTTTGCCTGACGTTTGCCTGACTGAGCGTATGTTATAAACTGATATTGTGTGTCTGCTTGATGTCTGCTTGAAGAACGGCGTTCGTCGGCGTTCGTAACCTAAGCTCATGATATGCAATCCCTACGTTTGTCAATTATTTACATTTCTACTTCGACTACGATCGACTACGATTATGTTTACTCTAAAAGCTTTAAGTTTTGCTGCGCTGCTTGCTGCGCTGCTGAAGTGAATAAAT

Full Affymetrix probeset data:

Annotations for 1639139_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720