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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639145_s_at:

>probe:Drosophila_2:1639145_s_at:180:499; Interrogation_Position=3052; Antisense; GTCTTTGAAACCGTGCTGGCCGCGT
>probe:Drosophila_2:1639145_s_at:632:719; Interrogation_Position=3076; Antisense; TTCCTCTCATACTGCCCGGGCATGG
>probe:Drosophila_2:1639145_s_at:341:551; Interrogation_Position=3099; Antisense; GGAGAAGGGTCTGCGCATGTACCCC
>probe:Drosophila_2:1639145_s_at:581:283; Interrogation_Position=3124; Antisense; CTGAAACTCGTCTGGTGGTTCCCGG
>probe:Drosophila_2:1639145_s_at:270:519; Interrogation_Position=3138; Antisense; GTGGTTCCCGGCTATTCCATTTGCG
>probe:Drosophila_2:1639145_s_at:527:19; Interrogation_Position=3156; Antisense; ATTTGCGCTGGCCATCTTCATCTAT
>probe:Drosophila_2:1639145_s_at:657:37; Interrogation_Position=3169; Antisense; ATCTTCATCTATGACGAGACCCGTC
>probe:Drosophila_2:1639145_s_at:114:609; Interrogation_Position=3180; Antisense; TGACGAGACCCGTCGTTTCTACTTG
>probe:Drosophila_2:1639145_s_at:519:317; Interrogation_Position=3221; Antisense; GCTGGTTGGAGCAGGAGACCTACTA
>probe:Drosophila_2:1639145_s_at:559:389; Interrogation_Position=3235; Antisense; GAGACCTACTATTAAACACCCACAC
>probe:Drosophila_2:1639145_s_at:538:157; Interrogation_Position=3294; Antisense; ACACGAATGCACACCACAACAAGAG
>probe:Drosophila_2:1639145_s_at:620:213; Interrogation_Position=3314; Antisense; AAGAGCAACCAGGAACACCCGCAAA
>probe:Drosophila_2:1639145_s_at:301:187; Interrogation_Position=3340; Antisense; AACACCTACAAACCATGGAGAGCAA
>probe:Drosophila_2:1639145_s_at:353:671; Interrogation_Position=3460; Antisense; TACGTCTACAACAAGCTACAGCAAG

Paste this into a BLAST search page for me
GTCTTTGAAACCGTGCTGGCCGCGTTTCCTCTCATACTGCCCGGGCATGGGGAGAAGGGTCTGCGCATGTACCCCCTGAAACTCGTCTGGTGGTTCCCGGGTGGTTCCCGGCTATTCCATTTGCGATTTGCGCTGGCCATCTTCATCTATATCTTCATCTATGACGAGACCCGTCTGACGAGACCCGTCGTTTCTACTTGGCTGGTTGGAGCAGGAGACCTACTAGAGACCTACTATTAAACACCCACACACACGAATGCACACCACAACAAGAGAAGAGCAACCAGGAACACCCGCAAAAACACCTACAAACCATGGAGAGCAATACGTCTACAACAAGCTACAGCAAG

Full Affymetrix probeset data:

Annotations for 1639145_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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