FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639218_s_at:

>probe:Drosophila_2:1639218_s_at:61:175; Interrogation_Position=1480; Antisense; AAACCATCGGCAGTACGACAGGCGG
>probe:Drosophila_2:1639218_s_at:414:407; Interrogation_Position=1505; Antisense; GACGTCCCGAGAAACAGCAAGCCAA
>probe:Drosophila_2:1639218_s_at:410:215; Interrogation_Position=1542; Antisense; AAGATGCCAGTCATCGGAACCGAAC
>probe:Drosophila_2:1639218_s_at:49:561; Interrogation_Position=1557; Antisense; GGAACCGAACTCATAATCGCAAGGT
>probe:Drosophila_2:1639218_s_at:594:661; Interrogation_Position=1595; Antisense; TAAAATGGATGGACACAGCGTGCGA
>probe:Drosophila_2:1639218_s_at:506:379; Interrogation_Position=1622; Antisense; GAAGCCCTCATTTGCAAGCTGTGAA
>probe:Drosophila_2:1639218_s_at:305:69; Interrogation_Position=1737; Antisense; AGGCCAGCAGAGCTACCGATCGAAA
>probe:Drosophila_2:1639218_s_at:672:327; Interrogation_Position=1762; Antisense; GCGATTCGAAAGTTCCCATACGTAG
>probe:Drosophila_2:1639218_s_at:298:563; Interrogation_Position=1786; Antisense; GGAATACACCTGTTGAAAACCCACA
>probe:Drosophila_2:1639218_s_at:662:329; Interrogation_Position=1819; Antisense; GCGTGGAATCCAGCCGTGAGCATGT
>probe:Drosophila_2:1639218_s_at:50:39; Interrogation_Position=1861; Antisense; ATCCCTATGTTGTGGAGATACCCGA
>probe:Drosophila_2:1639218_s_at:617:529; Interrogation_Position=1910; Antisense; GGGTAGCCAATCTGCGAAATCCAAA
>probe:Drosophila_2:1639218_s_at:204:145; Interrogation_Position=1965; Antisense; ACTGCTCTCTTTTTCTATGTTATCC
>probe:Drosophila_2:1639218_s_at:169:493; Interrogation_Position=2033; Antisense; GTAACGTTTTATGGGCAGCACTTGC

Paste this into a BLAST search page for me
AAACCATCGGCAGTACGACAGGCGGGACGTCCCGAGAAACAGCAAGCCAAAAGATGCCAGTCATCGGAACCGAACGGAACCGAACTCATAATCGCAAGGTTAAAATGGATGGACACAGCGTGCGAGAAGCCCTCATTTGCAAGCTGTGAAAGGCCAGCAGAGCTACCGATCGAAAGCGATTCGAAAGTTCCCATACGTAGGGAATACACCTGTTGAAAACCCACAGCGTGGAATCCAGCCGTGAGCATGTATCCCTATGTTGTGGAGATACCCGAGGGTAGCCAATCTGCGAAATCCAAAACTGCTCTCTTTTTCTATGTTATCCGTAACGTTTTATGGGCAGCACTTGC

Full Affymetrix probeset data:

Annotations for 1639218_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720