FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639306_s_at:

>probe:Drosophila_2:1639306_s_at:424:701; Interrogation_Position=5765; Antisense; TTTTACACACTCGTAACTCACTCAT
>probe:Drosophila_2:1639306_s_at:62:493; Interrogation_Position=5777; Antisense; GTAACTCACTCATAGGAATAGCCGA
>probe:Drosophila_2:1639306_s_at:19:317; Interrogation_Position=5928; Antisense; GCCGGAGCCCAACAAAAAGCCGATT
>probe:Drosophila_2:1639306_s_at:50:663; Interrogation_Position=5971; Antisense; TAAAGTCAGGTCAGCGAAGCCAGTT
>probe:Drosophila_2:1639306_s_at:592:377; Interrogation_Position=5986; Antisense; GAAGCCAGTTAGTCTGCGGTACGCT
>probe:Drosophila_2:1639306_s_at:682:281; Interrogation_Position=5999; Antisense; CTGCGGTACGCTTAATTTTTAGACT
>probe:Drosophila_2:1639306_s_at:436:401; Interrogation_Position=6020; Antisense; GACTTCACATTTCGTTTTACCCCAT
>probe:Drosophila_2:1639306_s_at:389:705; Interrogation_Position=6036; Antisense; TTACCCCATCTGTGTCCTGGAAGAA
>probe:Drosophila_2:1639306_s_at:3:515; Interrogation_Position=6047; Antisense; GTGTCCTGGAAGAAGATCTGCGTTT
>probe:Drosophila_2:1639306_s_at:590:451; Interrogation_Position=6061; Antisense; GATCTGCGTTTTGGTTATTCTTTTA
>probe:Drosophila_2:1639306_s_at:502:111; Interrogation_Position=6141; Antisense; AGCAATCTAGCAGTTTAGGCTTTTA
>probe:Drosophila_2:1639306_s_at:458:661; Interrogation_Position=6194; Antisense; TAGACTTTTCCCCAGAGAAATTGTA
>probe:Drosophila_2:1639306_s_at:5:661; Interrogation_Position=6244; Antisense; TACAAACCTGGCTTACTTTAACTCG
>probe:Drosophila_2:1639306_s_at:364:187; Interrogation_Position=6263; Antisense; AACTCGCCTACTATAGATCCTTAAT

Paste this into a BLAST search page for me
TTTTACACACTCGTAACTCACTCATGTAACTCACTCATAGGAATAGCCGAGCCGGAGCCCAACAAAAAGCCGATTTAAAGTCAGGTCAGCGAAGCCAGTTGAAGCCAGTTAGTCTGCGGTACGCTCTGCGGTACGCTTAATTTTTAGACTGACTTCACATTTCGTTTTACCCCATTTACCCCATCTGTGTCCTGGAAGAAGTGTCCTGGAAGAAGATCTGCGTTTGATCTGCGTTTTGGTTATTCTTTTAAGCAATCTAGCAGTTTAGGCTTTTATAGACTTTTCCCCAGAGAAATTGTATACAAACCTGGCTTACTTTAACTCGAACTCGCCTACTATAGATCCTTAAT

Full Affymetrix probeset data:

Annotations for 1639306_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720