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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639367_a_at:

>probe:Drosophila_2:1639367_a_at:675:215; Interrogation_Position=1463; Antisense; AAGATTCATCGATCTCACTGTCAGC
>probe:Drosophila_2:1639367_a_at:258:141; Interrogation_Position=1516; Antisense; ACGGCAATTGCGAACACCTGTTTGT
>probe:Drosophila_2:1639367_a_at:141:487; Interrogation_Position=1551; Antisense; GTAGAGGTGCTAACGCCACTTAGTA
>probe:Drosophila_2:1639367_a_at:264:663; Interrogation_Position=1574; Antisense; TAAACGGCCAGATCGCAGCCTGTAT
>probe:Drosophila_2:1639367_a_at:540:259; Interrogation_Position=1608; Antisense; CACGCCTTCAGTACGTTTAATCGCA
>probe:Drosophila_2:1639367_a_at:687:621; Interrogation_Position=1647; Antisense; TGCGGCATTCGCAGCTATAGCTTCA
>probe:Drosophila_2:1639367_a_at:614:685; Interrogation_Position=1662; Antisense; TATAGCTTCATCGTGAACCAGTCCC
>probe:Drosophila_2:1639367_a_at:430:597; Interrogation_Position=1714; Antisense; TGTGCCGCAGATGTTTTCTCAGCTT
>probe:Drosophila_2:1639367_a_at:367:713; Interrogation_Position=1729; Antisense; TTCTCAGCTTCTTTTACGTGGATGG
>probe:Drosophila_2:1639367_a_at:175:207; Interrogation_Position=1758; Antisense; AAGCTGGGCCAGTTCAAAGCCTATC
>probe:Drosophila_2:1639367_a_at:712:255; Interrogation_Position=1772; Antisense; CAAAGCCTATCGCATGTATGACCAT
>probe:Drosophila_2:1639367_a_at:207:39; Interrogation_Position=1837; Antisense; ATCTCCCCTCCTGAATATACATATA
>probe:Drosophila_2:1639367_a_at:676:699; Interrogation_Position=1873; Antisense; TTTTTTCTTTATTTGCGAGCTCCTT
>probe:Drosophila_2:1639367_a_at:322:419; Interrogation_Position=1889; Antisense; GAGCTCCTTTGACTGCAAGATCGCT

Paste this into a BLAST search page for me
AAGATTCATCGATCTCACTGTCAGCACGGCAATTGCGAACACCTGTTTGTGTAGAGGTGCTAACGCCACTTAGTATAAACGGCCAGATCGCAGCCTGTATCACGCCTTCAGTACGTTTAATCGCATGCGGCATTCGCAGCTATAGCTTCATATAGCTTCATCGTGAACCAGTCCCTGTGCCGCAGATGTTTTCTCAGCTTTTCTCAGCTTCTTTTACGTGGATGGAAGCTGGGCCAGTTCAAAGCCTATCCAAAGCCTATCGCATGTATGACCATATCTCCCCTCCTGAATATACATATATTTTTTCTTTATTTGCGAGCTCCTTGAGCTCCTTTGACTGCAAGATCGCT

Full Affymetrix probeset data:

Annotations for 1639367_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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