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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639375_a_at:

>probe:Drosophila_2:1639375_a_at:57:443; Interrogation_Position=1882; Antisense; GATGTGCGCGATTCTGGATACGGCA
>probe:Drosophila_2:1639375_a_at:332:571; Interrogation_Position=1927; Antisense; GGCTCTCGGACATCTAGCGCGATTT
>probe:Drosophila_2:1639375_a_at:527:459; Interrogation_Position=1947; Antisense; GATTTCGTCACCAGAAGGCTCGGAA
>probe:Drosophila_2:1639375_a_at:406:227; Interrogation_Position=1961; Antisense; AAGGCTCGGAAGTGTCTTGCTCGGA
>probe:Drosophila_2:1639375_a_at:9:407; Interrogation_Position=1988; Antisense; GACTGTGTAATCACGACGTCCACGA
>probe:Drosophila_2:1639375_a_at:84:665; Interrogation_Position=2038; Antisense; TACAGTCACCAGTCGCAGTTGGATC
>probe:Drosophila_2:1639375_a_at:576:723; Interrogation_Position=2077; Antisense; TTGCAGATGTGGGACGACTTCGACG
>probe:Drosophila_2:1639375_a_at:465:105; Interrogation_Position=2123; Antisense; AGACATATTACATTCCCCAGGAGGT
>probe:Drosophila_2:1639375_a_at:515:299; Interrogation_Position=2138; Antisense; CCCAGGAGGTGGTTATGGCCTTCAA
>probe:Drosophila_2:1639375_a_at:592:219; Interrogation_Position=2161; Antisense; AAGTGCCACCGGGAGCAAGTGCAGC
>probe:Drosophila_2:1639375_a_at:601:191; Interrogation_Position=2221; Antisense; AACTTCGAGCGACTGTGCGTGCAGC
>probe:Drosophila_2:1639375_a_at:129:207; Interrogation_Position=2275; Antisense; AAGCGGACGACTTCTGCACTGGTTG
>probe:Drosophila_2:1639375_a_at:237:725; Interrogation_Position=2322; Antisense; TTGTAGTTATTCAGTCGGGCGCAGC
>probe:Drosophila_2:1639375_a_at:235:17; Interrogation_Position=2348; Antisense; ATTTTAAAAAATCCGCCCGCATGCA

Paste this into a BLAST search page for me
GATGTGCGCGATTCTGGATACGGCAGGCTCTCGGACATCTAGCGCGATTTGATTTCGTCACCAGAAGGCTCGGAAAAGGCTCGGAAGTGTCTTGCTCGGAGACTGTGTAATCACGACGTCCACGATACAGTCACCAGTCGCAGTTGGATCTTGCAGATGTGGGACGACTTCGACGAGACATATTACATTCCCCAGGAGGTCCCAGGAGGTGGTTATGGCCTTCAAAAGTGCCACCGGGAGCAAGTGCAGCAACTTCGAGCGACTGTGCGTGCAGCAAGCGGACGACTTCTGCACTGGTTGTTGTAGTTATTCAGTCGGGCGCAGCATTTTAAAAAATCCGCCCGCATGCA

Full Affymetrix probeset data:

Annotations for 1639375_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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