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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639387_s_at:

>probe:Drosophila_2:1639387_s_at:85:181; Interrogation_Position=2223; Antisense; AAAAACCTTACTCTATCTGCATATT
>probe:Drosophila_2:1639387_s_at:171:643; Interrogation_Position=2238; Antisense; TCTGCATATTACACGAATCATTCAC
>probe:Drosophila_2:1639387_s_at:729:379; Interrogation_Position=2265; Antisense; GTTGAAACTTTCTGTTTGAGACTTA
>probe:Drosophila_2:1639387_s_at:175:423; Interrogation_Position=2282; Antisense; GAGACTTAAGTTATCGTACTTGATA
>probe:Drosophila_2:1639387_s_at:361:713; Interrogation_Position=2315; Antisense; TTCATACAACTAAAACACTCCGTGC
>probe:Drosophila_2:1639387_s_at:38:157; Interrogation_Position=2329; Antisense; ACACTCCGTGCATTTTATTTTAACG
>probe:Drosophila_2:1639387_s_at:710:17; Interrogation_Position=2399; Antisense; ATTTCTGTATGCTTTTCTGCAGGAC
>probe:Drosophila_2:1639387_s_at:500:641; Interrogation_Position=2414; Antisense; TCTGCAGGACTTTTACTTATCGTAT
>probe:Drosophila_2:1639387_s_at:43:639; Interrogation_Position=2433; Antisense; TCGTATACGATTGTTGGATGCTTTA
>probe:Drosophila_2:1639387_s_at:481:547; Interrogation_Position=2448; Antisense; GGATGCTTTAACGATTTGCTTTATA
>probe:Drosophila_2:1639387_s_at:105:95; Interrogation_Position=2606; Antisense; AGATCACATTCCTCAATTTAGCCAT
>probe:Drosophila_2:1639387_s_at:705:243; Interrogation_Position=2619; Antisense; CAATTTAGCCATAGACTTTTAGTCG
>probe:Drosophila_2:1639387_s_at:520:135; Interrogation_Position=2654; Antisense; ACGCAAATATTTGTGACATCCATCA
>probe:Drosophila_2:1639387_s_at:459:355; Interrogation_Position=2698; Antisense; GCACGCACACTAACACATCCAAAAA

Paste this into a BLAST search page for me
AAAAACCTTACTCTATCTGCATATTTCTGCATATTACACGAATCATTCACGTTGAAACTTTCTGTTTGAGACTTAGAGACTTAAGTTATCGTACTTGATATTCATACAACTAAAACACTCCGTGCACACTCCGTGCATTTTATTTTAACGATTTCTGTATGCTTTTCTGCAGGACTCTGCAGGACTTTTACTTATCGTATTCGTATACGATTGTTGGATGCTTTAGGATGCTTTAACGATTTGCTTTATAAGATCACATTCCTCAATTTAGCCATCAATTTAGCCATAGACTTTTAGTCGACGCAAATATTTGTGACATCCATCAGCACGCACACTAACACATCCAAAAA

Full Affymetrix probeset data:

Annotations for 1639387_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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