FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639396_s_at:

>probe:Drosophila_2:1639396_s_at:49:63; Interrogation_Position=1783; Antisense; ATGTGATGCTATCGCTGAACACCGG
>probe:Drosophila_2:1639396_s_at:206:559; Interrogation_Position=1821; Antisense; GGACATCCCATAAACACCGACTTTG
>probe:Drosophila_2:1639396_s_at:148:373; Interrogation_Position=1853; Antisense; GAAGTCGCAGCCCAACAAGGAGTAC
>probe:Drosophila_2:1639396_s_at:209:427; Interrogation_Position=1872; Antisense; GAGTACGGCATCAACGAGACGGTGA
>probe:Drosophila_2:1639396_s_at:599:371; Interrogation_Position=1895; Antisense; GAAGGTCACCTACATATCCGGAAAT
>probe:Drosophila_2:1639396_s_at:597:559; Interrogation_Position=1914; Antisense; GGAAATCCGCGTAACAACCTCTTCA
>probe:Drosophila_2:1639396_s_at:137:423; Interrogation_Position=1941; Antisense; GAGAAAACCTACTTCACCATTGAGC
>probe:Drosophila_2:1639396_s_at:213:27; Interrogation_Position=1999; Antisense; ATACGGATGCCAGCTGGGAGACCAA
>probe:Drosophila_2:1639396_s_at:601:589; Interrogation_Position=2026; Antisense; TGGTCTGGCACCGAACCAATACGAT
>probe:Drosophila_2:1639396_s_at:475:249; Interrogation_Position=2042; Antisense; CAATACGATCCTGGGCTTCAGCGAA
>probe:Drosophila_2:1639396_s_at:355:169; Interrogation_Position=2065; Antisense; AAATGGACATCTACTGGGACATCAG
>probe:Drosophila_2:1639396_s_at:11:527; Interrogation_Position=2107; Antisense; GGGAATATCGCATTCGCCATTCCGG
>probe:Drosophila_2:1639396_s_at:76:431; Interrogation_Position=2133; Antisense; GAGTACAAGTACATCCTGGGCGGAA
>probe:Drosophila_2:1639396_s_at:278:309; Interrogation_Position=2249; Antisense; CCAGACAGTTGTAGGGCCCATCAAA

Paste this into a BLAST search page for me
ATGTGATGCTATCGCTGAACACCGGGGACATCCCATAAACACCGACTTTGGAAGTCGCAGCCCAACAAGGAGTACGAGTACGGCATCAACGAGACGGTGAGAAGGTCACCTACATATCCGGAAATGGAAATCCGCGTAACAACCTCTTCAGAGAAAACCTACTTCACCATTGAGCATACGGATGCCAGCTGGGAGACCAATGGTCTGGCACCGAACCAATACGATCAATACGATCCTGGGCTTCAGCGAAAAATGGACATCTACTGGGACATCAGGGGAATATCGCATTCGCCATTCCGGGAGTACAAGTACATCCTGGGCGGAACCAGACAGTTGTAGGGCCCATCAAA

Full Affymetrix probeset data:

Annotations for 1639396_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720