FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639437_s_at:

>probe:Drosophila_2:1639437_s_at:536:525; Interrogation_Position=1563; Antisense; GGGCATATATCGTCGCTGCGCAAGC
>probe:Drosophila_2:1639437_s_at:568:11; Interrogation_Position=1617; Antisense; ATTAACAGCACCCTGAAGGACGCCA
>probe:Drosophila_2:1639437_s_at:180:183; Interrogation_Position=1645; Antisense; AAAAGCACTTCGATCCACGCACGGG
>probe:Drosophila_2:1639437_s_at:79:521; Interrogation_Position=1704; Antisense; GTGGCCATGGCGTATTCCAAGTCGG
>probe:Drosophila_2:1639437_s_at:165:159; Interrogation_Position=1771; Antisense; ACAACGCGGACAGCCTAATGACACT
>probe:Drosophila_2:1639437_s_at:546:55; Interrogation_Position=1788; Antisense; ATGACACTGGGCTCGCGGCAGGATC
>probe:Drosophila_2:1639437_s_at:644:313; Interrogation_Position=1818; Antisense; GCCAGCAACCTGACTATGTACACGT
>probe:Drosophila_2:1639437_s_at:30:601; Interrogation_Position=1834; Antisense; TGTACACGTCCATGGAGACCGAATT
>probe:Drosophila_2:1639437_s_at:504:279; Interrogation_Position=1900; Antisense; CTAATCTCCCATATGCTTCTCAAGT
>probe:Drosophila_2:1639437_s_at:538:211; Interrogation_Position=1927; Antisense; AAGACAGTGCCTACGGATCGGTCGA
>probe:Drosophila_2:1639437_s_at:643:113; Interrogation_Position=1977; Antisense; AGCAGAAGTCCCTCGCTGATGAAGG
>probe:Drosophila_2:1639437_s_at:105:607; Interrogation_Position=1993; Antisense; TGATGAAGGACACCGCCTACGATCG
>probe:Drosophila_2:1639437_s_at:395:325; Interrogation_Position=2051; Antisense; GCGACAGCGCAGATAGCTTCCCAGG
>probe:Drosophila_2:1639437_s_at:634:103; Interrogation_Position=2081; Antisense; AGACGAGCGGCCACTGATTTAAAAG

Paste this into a BLAST search page for me
GGGCATATATCGTCGCTGCGCAAGCATTAACAGCACCCTGAAGGACGCCAAAAAGCACTTCGATCCACGCACGGGGTGGCCATGGCGTATTCCAAGTCGGACAACGCGGACAGCCTAATGACACTATGACACTGGGCTCGCGGCAGGATCGCCAGCAACCTGACTATGTACACGTTGTACACGTCCATGGAGACCGAATTCTAATCTCCCATATGCTTCTCAAGTAAGACAGTGCCTACGGATCGGTCGAAGCAGAAGTCCCTCGCTGATGAAGGTGATGAAGGACACCGCCTACGATCGGCGACAGCGCAGATAGCTTCCCAGGAGACGAGCGGCCACTGATTTAAAAG

Full Affymetrix probeset data:

Annotations for 1639437_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720