FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639482_a_at:

>probe:Drosophila_2:1639482_a_at:105:525; Interrogation_Position=1833; Antisense; GGGCACCGCCGAGCACGTTAAGGAC
>probe:Drosophila_2:1639482_a_at:219:293; Interrogation_Position=1848; Antisense; CGTTAAGGACCCCAAGGACTTGCAT
>probe:Drosophila_2:1639482_a_at:557:721; Interrogation_Position=1867; Antisense; TTGCATCGCGCAAGCTCCATTGTGC
>probe:Drosophila_2:1639482_a_at:280:411; Interrogation_Position=1920; Antisense; GACCCACACCCATGACGAGGACTAT
>probe:Drosophila_2:1639482_a_at:80:77; Interrogation_Position=1955; Antisense; AGGAGACACCCAGTGGTGCCGAGTC
>probe:Drosophila_2:1639482_a_at:329:507; Interrogation_Position=1970; Antisense; GTGCCGAGTCTTCCACAGAGGCTGT
>probe:Drosophila_2:1639482_a_at:501:293; Interrogation_Position=1998; Antisense; CGATGCCTCCGAAGACTAGATGATG
>probe:Drosophila_2:1639482_a_at:169:213; Interrogation_Position=2009; Antisense; AAGACTAGATGATGCCACAGCCGCC
>probe:Drosophila_2:1639482_a_at:479:125; Interrogation_Position=2027; Antisense; AGCCGCCCTTCTGGAATGGAATGTT
>probe:Drosophila_2:1639482_a_at:658:699; Interrogation_Position=2064; Antisense; TTTTATTCTCAAACTTCCCCAATGC
>probe:Drosophila_2:1639482_a_at:150:49; Interrogation_Position=2119; Antisense; ATCCACACCGTGGTCGAAGCAATTA
>probe:Drosophila_2:1639482_a_at:426:391; Interrogation_Position=2145; Antisense; GAAACGTACGATTTTCCCTGGCGAT
>probe:Drosophila_2:1639482_a_at:555:575; Interrogation_Position=2164; Antisense; GGCGATTTTACCCAAGCACAGATAT
>probe:Drosophila_2:1639482_a_at:223:121; Interrogation_Position=2244; Antisense; AGCTGGTTCCATACATATAATGTGT

Paste this into a BLAST search page for me
GGGCACCGCCGAGCACGTTAAGGACCGTTAAGGACCCCAAGGACTTGCATTTGCATCGCGCAAGCTCCATTGTGCGACCCACACCCATGACGAGGACTATAGGAGACACCCAGTGGTGCCGAGTCGTGCCGAGTCTTCCACAGAGGCTGTCGATGCCTCCGAAGACTAGATGATGAAGACTAGATGATGCCACAGCCGCCAGCCGCCCTTCTGGAATGGAATGTTTTTTATTCTCAAACTTCCCCAATGCATCCACACCGTGGTCGAAGCAATTAGAAACGTACGATTTTCCCTGGCGATGGCGATTTTACCCAAGCACAGATATAGCTGGTTCCATACATATAATGTGT

Full Affymetrix probeset data:

Annotations for 1639482_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720