FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639508_a_at:

>probe:Drosophila_2:1639508_a_at:468:307; Interrogation_Position=1025; Antisense; CCTACGTGCCCCAATACATTGAGAT
>probe:Drosophila_2:1639508_a_at:347:507; Interrogation_Position=1030; Antisense; GTGCCCCAATACATTGAGATCAAGA
>probe:Drosophila_2:1639508_a_at:486:135; Interrogation_Position=1057; Antisense; ACGCAGGACGCGGAGGGATTCTCTC
>probe:Drosophila_2:1639508_a_at:618:551; Interrogation_Position=1062; Antisense; GGACGCGGAGGGATTCTCTCTGTAC
>probe:Drosophila_2:1639508_a_at:372:547; Interrogation_Position=1068; Antisense; GGAGGGATTCTCTCTGTACGTGTGC
>probe:Drosophila_2:1639508_a_at:114:463; Interrogation_Position=1073; Antisense; GATTCTCTCTGTACGTGTGCCTGGC
>probe:Drosophila_2:1639508_a_at:509:643; Interrogation_Position=1078; Antisense; TCTCTGTACGTGTGCCTGGCGCTGC
>probe:Drosophila_2:1639508_a_at:239:621; Interrogation_Position=1100; Antisense; TGCTGGTGGCCAACTCGCTGAGAAT
>probe:Drosophila_2:1639508_a_at:612:311; Interrogation_Position=1108; Antisense; GCCAACTCGCTGAGAATACTCTTCT
>probe:Drosophila_2:1639508_a_at:491:263; Interrogation_Position=916; Antisense; CAGAGATAGCTCACAATGGATTGGA
>probe:Drosophila_2:1639508_a_at:513:339; Interrogation_Position=924; Antisense; GCTCACAATGGATTGGATCATCAAT
>probe:Drosophila_2:1639508_a_at:339:249; Interrogation_Position=945; Antisense; CAATGATGAGATGGGCCTGACGGTC
>probe:Drosophila_2:1639508_a_at:501:323; Interrogation_Position=957; Antisense; GGGCCTGACGGTCGGTCACGTGGTG
>probe:Drosophila_2:1639508_a_at:597:299; Interrogation_Position=990; Antisense; CGCCGCCTCCGCAATGGTTATTGGG

Paste this into a BLAST search page for me
CCTACGTGCCCCAATACATTGAGATGTGCCCCAATACATTGAGATCAAGAACGCAGGACGCGGAGGGATTCTCTCGGACGCGGAGGGATTCTCTCTGTACGGAGGGATTCTCTCTGTACGTGTGCGATTCTCTCTGTACGTGTGCCTGGCTCTCTGTACGTGTGCCTGGCGCTGCTGCTGGTGGCCAACTCGCTGAGAATGCCAACTCGCTGAGAATACTCTTCTCAGAGATAGCTCACAATGGATTGGAGCTCACAATGGATTGGATCATCAATCAATGATGAGATGGGCCTGACGGTCGGGCCTGACGGTCGGTCACGTGGTGCGCCGCCTCCGCAATGGTTATTGGG

Full Affymetrix probeset data:

Annotations for 1639508_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720