FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639543_at:

>probe:Drosophila_2:1639543_at:39:353; Interrogation_Position=1011; Antisense; GCAGCTAAACACCATCACGCACAAG
>probe:Drosophila_2:1639543_at:264:35; Interrogation_Position=1024; Antisense; ATCACGCACAAGTCGGCGGCAGGAC
>probe:Drosophila_2:1639543_at:518:331; Interrogation_Position=1039; Antisense; GCGGCAGGACGAAACCACATCATCA
>probe:Drosophila_2:1639543_at:418:175; Interrogation_Position=1050; Antisense; AAACCACATCATCACGGACACACTG
>probe:Drosophila_2:1639543_at:425:135; Interrogation_Position=589; Antisense; ACGCTGAGTCGCTACGAGCAGCTGG
>probe:Drosophila_2:1639543_at:547:419; Interrogation_Position=618; Antisense; GAGCATGGCCAGCTATTCAGCCGGA
>probe:Drosophila_2:1639543_at:483:311; Interrogation_Position=625; Antisense; GCCAGCTATTCAGCCGGAGCGGGCA
>probe:Drosophila_2:1639543_at:249:633; Interrogation_Position=676; Antisense; TCCGCCGGCAGCACGGTGAGCAATG
>probe:Drosophila_2:1639543_at:681:533; Interrogation_Position=690; Antisense; GGTGAGCAATGCGATGGCCGCCAAC
>probe:Drosophila_2:1639543_at:622:609; Interrogation_Position=818; Antisense; TGACCACCAGCAGCCTTATAGACTA
>probe:Drosophila_2:1639543_at:664:303; Interrogation_Position=831; Antisense; CCTTATAGACTACGGCCTCAACAAG
>probe:Drosophila_2:1639543_at:346:269; Interrogation_Position=966; Antisense; CATGGGCATGGCATCGACGATGGCC
>probe:Drosophila_2:1639543_at:688:137; Interrogation_Position=982; Antisense; ACGATGGCCGGCACGAGCCTGTCGC
>probe:Drosophila_2:1639543_at:507:125; Interrogation_Position=997; Antisense; AGCCTGTCGCCGTCGCAGCTAAACA

Paste this into a BLAST search page for me
GCAGCTAAACACCATCACGCACAAGATCACGCACAAGTCGGCGGCAGGACGCGGCAGGACGAAACCACATCATCAAAACCACATCATCACGGACACACTGACGCTGAGTCGCTACGAGCAGCTGGGAGCATGGCCAGCTATTCAGCCGGAGCCAGCTATTCAGCCGGAGCGGGCATCCGCCGGCAGCACGGTGAGCAATGGGTGAGCAATGCGATGGCCGCCAACTGACCACCAGCAGCCTTATAGACTACCTTATAGACTACGGCCTCAACAAGCATGGGCATGGCATCGACGATGGCCACGATGGCCGGCACGAGCCTGTCGCAGCCTGTCGCCGTCGCAGCTAAACA

Full Affymetrix probeset data:

Annotations for 1639543_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720