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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639545_a_at:

>probe:Drosophila_2:1639545_a_at:59:267; Interrogation_Position=1514; Antisense; CATCATACAAAGCAGTCCCGGTTTT
>probe:Drosophila_2:1639545_a_at:27:349; Interrogation_Position=1525; Antisense; GCAGTCCCGGTTTTTAGGCTTTGAG
>probe:Drosophila_2:1639545_a_at:611:677; Interrogation_Position=1539; Antisense; TAGGCTTTGAGCAACCCGAACGAAC
>probe:Drosophila_2:1639545_a_at:491:201; Interrogation_Position=1561; Antisense; AACCACCCAACGTCAACACAGTGAA
>probe:Drosophila_2:1639545_a_at:352:179; Interrogation_Position=1624; Antisense; AAACATTCCTGCATTGTAGTCTAAG
>probe:Drosophila_2:1639545_a_at:267:267; Interrogation_Position=1708; Antisense; CAGTAACCGATAAGTGTTTCCCACA
>probe:Drosophila_2:1639545_a_at:564:479; Interrogation_Position=1723; Antisense; GTTTCCCACATCATTCAACTCGAAG
>probe:Drosophila_2:1639545_a_at:259:95; Interrogation_Position=1746; Antisense; AGATTGATAACTGCTTGCCAAGGCT
>probe:Drosophila_2:1639545_a_at:469:311; Interrogation_Position=1762; Antisense; GCCAAGGCTCCTGTAATATATTTAT
>probe:Drosophila_2:1639545_a_at:182:21; Interrogation_Position=1777; Antisense; ATATATTTATGCGTATGCCTAACCA
>probe:Drosophila_2:1639545_a_at:187:329; Interrogation_Position=1787; Antisense; GCGTATGCCTAACCAATCATTGTCG
>probe:Drosophila_2:1639545_a_at:386:673; Interrogation_Position=1905; Antisense; TTAGTTCTATAGTCGTACCCTAAAT
>probe:Drosophila_2:1639545_a_at:594:457; Interrogation_Position=1916; Antisense; GTCGTACCCTAAATATAACTCGCCA
>probe:Drosophila_2:1639545_a_at:94:195; Interrogation_Position=1932; Antisense; AACTCGCCAGGCAATTTGTATATAG

Paste this into a BLAST search page for me
CATCATACAAAGCAGTCCCGGTTTTGCAGTCCCGGTTTTTAGGCTTTGAGTAGGCTTTGAGCAACCCGAACGAACAACCACCCAACGTCAACACAGTGAAAAACATTCCTGCATTGTAGTCTAAGCAGTAACCGATAAGTGTTTCCCACAGTTTCCCACATCATTCAACTCGAAGAGATTGATAACTGCTTGCCAAGGCTGCCAAGGCTCCTGTAATATATTTATATATATTTATGCGTATGCCTAACCAGCGTATGCCTAACCAATCATTGTCGTTAGTTCTATAGTCGTACCCTAAATGTCGTACCCTAAATATAACTCGCCAAACTCGCCAGGCAATTTGTATATAG

Full Affymetrix probeset data:

Annotations for 1639545_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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