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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639566_s_at:

>probe:Drosophila_2:1639566_s_at:722:539; Interrogation_Position=5358; Antisense; GGTATTATTAGCTCGTAGGCAATCA
>probe:Drosophila_2:1639566_s_at:202:49; Interrogation_Position=5468; Antisense; ATGCCAAACTTTTACACGATCTCTC
>probe:Drosophila_2:1639566_s_at:650:451; Interrogation_Position=5485; Antisense; GATCTCTCGTATTTTGTCGTTCTTT
>probe:Drosophila_2:1639566_s_at:219:663; Interrogation_Position=5552; Antisense; TACACCCAACAACTCAACGTTAATC
>probe:Drosophila_2:1639566_s_at:572:507; Interrogation_Position=5598; Antisense; GTGCGAGCATGTCCACAAACCATAT
>probe:Drosophila_2:1639566_s_at:62:367; Interrogation_Position=5625; Antisense; GAATCTGTCTAATTGTCCGCTTCGT
>probe:Drosophila_2:1639566_s_at:156:469; Interrogation_Position=5648; Antisense; GTTCGATGACCTCACATAACTTTGC
>probe:Drosophila_2:1639566_s_at:629:709; Interrogation_Position=5703; Antisense; TTAAGTGACTTTATCGCGCCATATA
>probe:Drosophila_2:1639566_s_at:198:323; Interrogation_Position=5718; Antisense; GCGCCATATAGATGTGCAGTCTCAA
>probe:Drosophila_2:1639566_s_at:660:77; Interrogation_Position=5761; Antisense; AGGTCCAGTTTCTAGTCTTAATTTG
>probe:Drosophila_2:1639566_s_at:600:613; Interrogation_Position=5796; Antisense; TGAAGCCGTTTCGAAATGGAGACAT
>probe:Drosophila_2:1639566_s_at:297:547; Interrogation_Position=5813; Antisense; GGAGACATGCCAAACTTTTACTTGT
>probe:Drosophila_2:1639566_s_at:434:653; Interrogation_Position=5839; Antisense; TAATGAATGACTTCGGCATGGCCCG
>probe:Drosophila_2:1639566_s_at:262:347; Interrogation_Position=5854; Antisense; GCATGGCCCGAAGGATCCTTCAATA

Paste this into a BLAST search page for me
GGTATTATTAGCTCGTAGGCAATCAATGCCAAACTTTTACACGATCTCTCGATCTCTCGTATTTTGTCGTTCTTTTACACCCAACAACTCAACGTTAATCGTGCGAGCATGTCCACAAACCATATGAATCTGTCTAATTGTCCGCTTCGTGTTCGATGACCTCACATAACTTTGCTTAAGTGACTTTATCGCGCCATATAGCGCCATATAGATGTGCAGTCTCAAAGGTCCAGTTTCTAGTCTTAATTTGTGAAGCCGTTTCGAAATGGAGACATGGAGACATGCCAAACTTTTACTTGTTAATGAATGACTTCGGCATGGCCCGGCATGGCCCGAAGGATCCTTCAATA

Full Affymetrix probeset data:

Annotations for 1639566_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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