FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639637_a_at:

>probe:Drosophila_2:1639637_a_at:288:277; Interrogation_Position=2933; Antisense; CTATGGGCCTTTCGATGTGGTGATT
>probe:Drosophila_2:1639637_a_at:114:79; Interrogation_Position=2990; Antisense; AGGTCCCTGTACATATCACTGGTGG
>probe:Drosophila_2:1639637_a_at:324:313; Interrogation_Position=3014; Antisense; GCCAGAATCTGTAGTGCCCATGACA
>probe:Drosophila_2:1639637_a_at:194:179; Interrogation_Position=3064; Antisense; AAACTCTTTCTTCTGCCCAAAAGCT
>probe:Drosophila_2:1639637_a_at:526:183; Interrogation_Position=3082; Antisense; AAAAGCTATAGCCTTCTGTCCTCCA
>probe:Drosophila_2:1639637_a_at:318:241; Interrogation_Position=3122; Antisense; AATACCTGCTCGGATATCGCTGATT
>probe:Drosophila_2:1639637_a_at:511:635; Interrogation_Position=3138; Antisense; TCGCTGATTCCGATCTGAGATGGTC
>probe:Drosophila_2:1639637_a_at:342:437; Interrogation_Position=3156; Antisense; GATGGTCGTTTGAGGTCATCCAACT
>probe:Drosophila_2:1639637_a_at:121:481; Interrogation_Position=3244; Antisense; GTGCTTAAAACCATTTCGCTTAGTG
>probe:Drosophila_2:1639637_a_at:487:231; Interrogation_Position=3280; Antisense; AATGATGTCCCAAAACTGCCTGCTT
>probe:Drosophila_2:1639637_a_at:223:341; Interrogation_Position=3301; Antisense; GCTTTGAAACCTTACAATCGCCCTT
>probe:Drosophila_2:1639637_a_at:3:299; Interrogation_Position=3319; Antisense; CGCCCTTCGGAATCTGAGTCAGTGA
>probe:Drosophila_2:1639637_a_at:716:655; Interrogation_Position=3362; Antisense; TAATCGAGTCGATGCTGTTGCCCAC
>probe:Drosophila_2:1639637_a_at:593:263; Interrogation_Position=3391; Antisense; CAGCATTTGCGGTCGTGGCATGTTG

Paste this into a BLAST search page for me
CTATGGGCCTTTCGATGTGGTGATTAGGTCCCTGTACATATCACTGGTGGGCCAGAATCTGTAGTGCCCATGACAAAACTCTTTCTTCTGCCCAAAAGCTAAAAGCTATAGCCTTCTGTCCTCCAAATACCTGCTCGGATATCGCTGATTTCGCTGATTCCGATCTGAGATGGTCGATGGTCGTTTGAGGTCATCCAACTGTGCTTAAAACCATTTCGCTTAGTGAATGATGTCCCAAAACTGCCTGCTTGCTTTGAAACCTTACAATCGCCCTTCGCCCTTCGGAATCTGAGTCAGTGATAATCGAGTCGATGCTGTTGCCCACCAGCATTTGCGGTCGTGGCATGTTG

Full Affymetrix probeset data:

Annotations for 1639637_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720