FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639660_s_at:

>probe:Drosophila_2:1639660_s_at:413:605; Interrogation_Position=1013; Antisense; TGATCACAACATCGGCATCGCTGGA
>probe:Drosophila_2:1639660_s_at:302:13; Interrogation_Position=1066; Antisense; ATTCAGATCTATCACCAGCGTCTGG
>probe:Drosophila_2:1639660_s_at:341:583; Interrogation_Position=1088; Antisense; TGGCGGAATGCCTCAAGCTACTGAA
>probe:Drosophila_2:1639660_s_at:672:339; Interrogation_Position=1104; Antisense; GCTACTGAACTACTCGAAGCCCATT
>probe:Drosophila_2:1639660_s_at:43:83; Interrogation_Position=1138; Antisense; AGGGACCTGCACATTATGATGCTGA
>probe:Drosophila_2:1639660_s_at:45:513; Interrogation_Position=1198; Antisense; GTGATGGTGGCCACACTTATGCCCA
>probe:Drosophila_2:1639660_s_at:122:59; Interrogation_Position=1246; Antisense; ATGATTCTGGCCCAAGGACCCGAGG
>probe:Drosophila_2:1639660_s_at:268:447; Interrogation_Position=1273; Antisense; GATGCCATACGATACAGGACCTTCA
>probe:Drosophila_2:1639660_s_at:566:31; Interrogation_Position=1297; Antisense; ATCAATCCCTACTATGCCAAAGCAA
>probe:Drosophila_2:1639660_s_at:358:509; Interrogation_Position=1327; Antisense; GTGCTTTTACCGTTCTTCGATAACA
>probe:Drosophila_2:1639660_s_at:505:363; Interrogation_Position=1368; Antisense; GAATTAGCTTTAATCCCGGATCCCA
>probe:Drosophila_2:1639660_s_at:663:545; Interrogation_Position=1385; Antisense; GGATCCCAATTGTGGTGTAGCCAAT
>probe:Drosophila_2:1639660_s_at:190:231; Interrogation_Position=877; Antisense; AATGTGCTGAACCACGGCGACTGTT
>probe:Drosophila_2:1639660_s_at:16:213; Interrogation_Position=998; Antisense; AAGACCTTTGGTACCTGATCACAAC

Paste this into a BLAST search page for me
TGATCACAACATCGGCATCGCTGGAATTCAGATCTATCACCAGCGTCTGGTGGCGGAATGCCTCAAGCTACTGAAGCTACTGAACTACTCGAAGCCCATTAGGGACCTGCACATTATGATGCTGAGTGATGGTGGCCACACTTATGCCCAATGATTCTGGCCCAAGGACCCGAGGGATGCCATACGATACAGGACCTTCAATCAATCCCTACTATGCCAAAGCAAGTGCTTTTACCGTTCTTCGATAACAGAATTAGCTTTAATCCCGGATCCCAGGATCCCAATTGTGGTGTAGCCAATAATGTGCTGAACCACGGCGACTGTTAAGACCTTTGGTACCTGATCACAAC

Full Affymetrix probeset data:

Annotations for 1639660_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720