FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639689_at:

>probe:Drosophila_2:1639689_at:12:423; Interrogation_Position=1820; Antisense; GAGACGGATGCGATACCGCACCTTC
>probe:Drosophila_2:1639689_at:548:455; Interrogation_Position=1831; Antisense; GATACCGCACCTTCGAAGTACAGTG
>probe:Drosophila_2:1639689_at:289:665; Interrogation_Position=1912; Antisense; TACAAAATGTTTTCTGGACCTGCTT
>probe:Drosophila_2:1639689_at:616:687; Interrogation_Position=1922; Antisense; TTTCTGGACCTGCTTAACAATGGAA
>probe:Drosophila_2:1639689_at:373:267; Interrogation_Position=1971; Antisense; CAGGGATCGGTCCAAAGTCCGCCTT
>probe:Drosophila_2:1639689_at:488:87; Interrogation_Position=1986; Antisense; AGTCCGCCTTTAGTTTGGCCTTGCA
>probe:Drosophila_2:1639689_at:465:705; Interrogation_Position=1995; Antisense; TTAGTTTGGCCTTGCACAGATCCCG
>probe:Drosophila_2:1639689_at:458:317; Interrogation_Position=2019; Antisense; GCCTGGGTTGCTTCGAGAATCTTTT
>probe:Drosophila_2:1639689_at:497:365; Interrogation_Position=2035; Antisense; GAATCTTTTTCAAGTCAAATCCCTG
>probe:Drosophila_2:1639689_at:468:195; Interrogation_Position=2102; Antisense; AACTGTCTCGACACTTGATACAATT
>probe:Drosophila_2:1639689_at:449:521; Interrogation_Position=2178; Antisense; GTGGCATATACTTTGATTTTACAAC
>probe:Drosophila_2:1639689_at:345:553; Interrogation_Position=2222; Antisense; GGAGCCGGATATCCTAAAACAAACA
>probe:Drosophila_2:1639689_at:681:483; Interrogation_Position=2258; Antisense; GTATGTGTAATATTTCTCAAGATGT
>probe:Drosophila_2:1639689_at:105:403; Interrogation_Position=2329; Antisense; GACTACCTATTAAATAAGCGCTATG

Paste this into a BLAST search page for me
GAGACGGATGCGATACCGCACCTTCGATACCGCACCTTCGAAGTACAGTGTACAAAATGTTTTCTGGACCTGCTTTTTCTGGACCTGCTTAACAATGGAACAGGGATCGGTCCAAAGTCCGCCTTAGTCCGCCTTTAGTTTGGCCTTGCATTAGTTTGGCCTTGCACAGATCCCGGCCTGGGTTGCTTCGAGAATCTTTTGAATCTTTTTCAAGTCAAATCCCTGAACTGTCTCGACACTTGATACAATTGTGGCATATACTTTGATTTTACAACGGAGCCGGATATCCTAAAACAAACAGTATGTGTAATATTTCTCAAGATGTGACTACCTATTAAATAAGCGCTATG

Full Affymetrix probeset data:

Annotations for 1639689_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720