FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639700_s_at:

>probe:Drosophila_2:1639700_s_at:548:245; Interrogation_Position=2679; Antisense; AATTCTTCGCTAGGTTTCATGTAAA
>probe:Drosophila_2:1639700_s_at:209:363; Interrogation_Position=2821; Antisense; GAATAGTAGTCGCAGCAAATTGTGT
>probe:Drosophila_2:1639700_s_at:611:389; Interrogation_Position=2848; Antisense; GAAACGATGTTAAACTGCCCTCCCA
>probe:Drosophila_2:1639700_s_at:161:603; Interrogation_Position=2855; Antisense; TGTTAAACTGCCCTCCCAAATCGGA
>probe:Drosophila_2:1639700_s_at:451:267; Interrogation_Position=2876; Antisense; CGGAACCGTGATTTAGTTGCTCGCG
>probe:Drosophila_2:1639700_s_at:500:469; Interrogation_Position=2891; Antisense; GTTGCTCGCGGATTCGAACAAGACA
>probe:Drosophila_2:1639700_s_at:409:395; Interrogation_Position=2912; Antisense; GACAATTAAATATTCTTCGATTCGA
>probe:Drosophila_2:1639700_s_at:1:715; Interrogation_Position=2927; Antisense; TTCGATTCGATTTAAAACACAATGC
>probe:Drosophila_2:1639700_s_at:389:3; Interrogation_Position=3076; Antisense; ATTGGAATTGTAAACTCCAGCGAAA
>probe:Drosophila_2:1639700_s_at:285:395; Interrogation_Position=3137; Antisense; GAAATCACGAAATTCGATTCGGAAT
>probe:Drosophila_2:1639700_s_at:705:9; Interrogation_Position=3153; Antisense; ATTCGGAATATCAGTTGTGGCACCC
>probe:Drosophila_2:1639700_s_at:34:729; Interrogation_Position=3167; Antisense; TTGTGGCACCCGAAGAGTGTCGCAT
>probe:Drosophila_2:1639700_s_at:425:433; Interrogation_Position=3181; Antisense; GAGTGTCGCATTAATTAGCTAACTT
>probe:Drosophila_2:1639700_s_at:396:179; Interrogation_Position=3232; Antisense; AACAGAAGTTGCTTGACAAAGGTAA

Paste this into a BLAST search page for me
AATTCTTCGCTAGGTTTCATGTAAAGAATAGTAGTCGCAGCAAATTGTGTGAAACGATGTTAAACTGCCCTCCCATGTTAAACTGCCCTCCCAAATCGGACGGAACCGTGATTTAGTTGCTCGCGGTTGCTCGCGGATTCGAACAAGACAGACAATTAAATATTCTTCGATTCGATTCGATTCGATTTAAAACACAATGCATTGGAATTGTAAACTCCAGCGAAAGAAATCACGAAATTCGATTCGGAATATTCGGAATATCAGTTGTGGCACCCTTGTGGCACCCGAAGAGTGTCGCATGAGTGTCGCATTAATTAGCTAACTTAACAGAAGTTGCTTGACAAAGGTAA

Full Affymetrix probeset data:

Annotations for 1639700_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720