FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1639722_s_at:

>probe:Drosophila_2:1639722_s_at:286:575; Interrogation_Position=1442; Antisense; GGCGTGAACATTTTTGCTCTCGAGG
>probe:Drosophila_2:1639722_s_at:494:649; Interrogation_Position=1468; Antisense; TCAGCGCACTTGGTTGGGTGTGCCA
>probe:Drosophila_2:1639722_s_at:114:651; Interrogation_Position=1519; Antisense; TCACGCCGAGTGTAAGCCCTCGAAA
>probe:Drosophila_2:1639722_s_at:83:387; Interrogation_Position=1614; Antisense; GAACAAGCGCAGCTGCAGAAACCAA
>probe:Drosophila_2:1639722_s_at:472:617; Interrogation_Position=1627; Antisense; TGCAGAAACCAACCACAGACTTATT
>probe:Drosophila_2:1639722_s_at:345:657; Interrogation_Position=1665; Antisense; TAAGTGCTTTAAACATGGCCCATAC
>probe:Drosophila_2:1639722_s_at:523:581; Interrogation_Position=1680; Antisense; TGGCCCATACAGCTTATCATCTATA
>probe:Drosophila_2:1639722_s_at:120:213; Interrogation_Position=1708; Antisense; AAGACGACAGCCAATCATGATTTTA
>probe:Drosophila_2:1639722_s_at:386:109; Interrogation_Position=1736; Antisense; AGAAGGACGCCGAGTCTTGTGACTT
>probe:Drosophila_2:1639722_s_at:290:431; Interrogation_Position=1747; Antisense; GAGTCTTGTGACTTTTGCCGCAAAA
>probe:Drosophila_2:1639722_s_at:467:181; Interrogation_Position=1768; Antisense; AAAAGCGCGTGCTCAACGAACGAAA
>probe:Drosophila_2:1639722_s_at:106:243; Interrogation_Position=1806; Antisense; AATATTGAGGTCGTTTCCATTGCAG
>probe:Drosophila_2:1639722_s_at:232:479; Interrogation_Position=1818; Antisense; GTTTCCATTGCAGCCCTTCATTTTT
>probe:Drosophila_2:1639722_s_at:509:465; Interrogation_Position=1921; Antisense; GATTGTGAACACGTATTCAAGCTGA

Paste this into a BLAST search page for me
GGCGTGAACATTTTTGCTCTCGAGGTCAGCGCACTTGGTTGGGTGTGCCATCACGCCGAGTGTAAGCCCTCGAAAGAACAAGCGCAGCTGCAGAAACCAATGCAGAAACCAACCACAGACTTATTTAAGTGCTTTAAACATGGCCCATACTGGCCCATACAGCTTATCATCTATAAAGACGACAGCCAATCATGATTTTAAGAAGGACGCCGAGTCTTGTGACTTGAGTCTTGTGACTTTTGCCGCAAAAAAAAGCGCGTGCTCAACGAACGAAAAATATTGAGGTCGTTTCCATTGCAGGTTTCCATTGCAGCCCTTCATTTTTGATTGTGAACACGTATTCAAGCTGA

Full Affymetrix probeset data:

Annotations for 1639722_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720